Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F07
         (466 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6QQW8 Cluster: WbsW; n=1; Shigella boydii|Rep: WbsW - ...    35   0.76 
UniRef50_A7UG39 Cluster: LysR transcriptional regulator; n=1; Fi...    34   1.3  
UniRef50_Q23AA8 Cluster: Cation channel family protein; n=1; Tet...    34   1.3  
UniRef50_Q73MJ0 Cluster: Permease, putative; n=1; Treponema dent...    34   1.8  
UniRef50_A6QC74 Cluster: Sugar epimerase/dehydratase; n=1; Sulfu...    33   3.1  
UniRef50_UPI00006D0DC7 Cluster: cation channel family protein; n...    32   5.4  
UniRef50_Q4Y351 Cluster: Putative uncharacterized protein; n=5; ...    32   5.4  
UniRef50_O96171 Cluster: Putative uncharacterized protein PFB038...    32   5.4  
UniRef50_A1SGS5 Cluster: 5-oxoprolinase; n=3; Actinomycetales|Re...    32   7.1  
UniRef50_Q9EME5 Cluster: AMV261; n=1; Amsacta moorei entomopoxvi...    31   9.4  

>UniRef50_Q6QQW8 Cluster: WbsW; n=1; Shigella boydii|Rep: WbsW -
           Shigella boydii
          Length = 280

 Score = 35.1 bits (77), Expect = 0.76
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 202 KTTNKIKLYNLLSKSPITLITHANVNHKKKK*TVIMKEHNNSSNSITDTC-VSEYRNWSK 26
           K T  + LYN   K   TL T  +  H  KK  V +  H+NS NS  D C +SE + + K
Sbjct: 2   KITILVVLYNKKFKESPTLQTILSEKHTLKKMNVELCIHDNSPNSQLDECYISEMKEFVK 61

Query: 25  QLTTYS 8
              T++
Sbjct: 62  CYYTHT 67


>UniRef50_A7UG39 Cluster: LysR transcriptional regulator; n=1;
           Fibrobacter succinogenes subsp. succinogenes S85|Rep:
           LysR transcriptional regulator - Fibrobacter
           succinogenes subsp. succinogenes S85
          Length = 296

 Score = 34.3 bits (75), Expect = 1.3
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 205 SKTTNKIKLYNLLSKSPITLITHANVNHKKKK*TVIMKEHNNSSNSITDTCVSEYRNWSK 26
           +K  N +KL N+L+ S  TLIT A + +++    + +    N   S+ D CV  Y N+  
Sbjct: 87  NKQNNNVKL-NVLAAS--TLITSAVIEYRRSNSDIDVDIVQNEETSVFDICVRTYANYRP 143

Query: 25  QL 20
           +L
Sbjct: 144 EL 145


>UniRef50_Q23AA8 Cluster: Cation channel family protein; n=1;
            Tetrahymena thermophila SB210|Rep: Cation channel family
            protein - Tetrahymena thermophila SB210
          Length = 1200

 Score = 34.3 bits (75), Expect = 1.3
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = -2

Query: 441  GTSDCVKSNKEKKNRKNYQHNGIATQHYRLIFEGIQGIIMKIR 313
            G+ DC+KS K K+N++N + +   + HY  + +  QGII +++
Sbjct: 929  GSGDCLKSKKVKQNKQNKERH---SDHYPELIQIFQGIIAQMK 968


>UniRef50_Q73MJ0 Cluster: Permease, putative; n=1; Treponema
           denticola|Rep: Permease, putative - Treponema denticola
          Length = 403

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
 Frame = +3

Query: 15  VVSCLLQFLYSLTHVSVIELDELLCSFIITVHFFFL*LTFACVISVIGDL--LSKLYNF 185
           V+SCL+ FL++   V+ +++  L  SF+ T   F   LTFA +ISVIG L  L  +Y+F
Sbjct: 338 VLSCLIMFLFNQAIVTGMKMPFLNPSFLWTFVCFL--LTFA-LISVIGPLAALKTMYSF 393


>UniRef50_A6QC74 Cluster: Sugar epimerase/dehydratase; n=1;
           Sulfurovum sp. NBC37-1|Rep: Sugar epimerase/dehydratase
           - Sulfurovum sp. (strain NBC37-1)
          Length = 305

 Score = 33.1 bits (72), Expect = 3.1
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = -1

Query: 250 EFLFIVEPSQ*IIIFSKTTNKIKLYNLLSKSPITLITHANVNHK----KKK*TVIMKEHN 83
           +++++ +  + I  F    NK K+YN+ + + + LI+ AN+ +K    K + T++   HN
Sbjct: 186 DYMYVDDMMRIIDWFIHNDNKEKIYNVSTGTKVDLISLANIVNKISDFKSEVTILNAGHN 245

Query: 82  NSSNSITDTCVSEYRNW 32
           N   S     + E  N+
Sbjct: 246 NEYTSSNKRLLDELINF 262


>UniRef50_UPI00006D0DC7 Cluster: cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 4299

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = -1

Query: 193 NKIKLYNLLSKSPITLITHANVNHKKKK*TVIMKEHNNSSNSITDTCVSEYRN 35
           NK++ + ++SKSP   + +  +N  K++   I +E NN  N  +++ +S+ R+
Sbjct: 107 NKLEEFEIISKSPTQKVINVQLNDLKQE---IQREENNLVNKSSNSFISKLRD 156


>UniRef50_Q4Y351 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 926

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = -1

Query: 238 IVEPSQ*IIIFSKTTNKIKLYNLLSKSPITLITHANVNHKKKK*TVIMKEHNNSSNSITD 59
           I EP +  I+F+    KI++YN ++K PI      N+  K+KK  +  ++ + + N+ TD
Sbjct: 409 ISEPDE--IVFADIKKKIRMYNNINKKPIHERYLENIK-KEKKSPICKEKSDKAKNAHTD 465


>UniRef50_O96171 Cluster: Putative uncharacterized protein PFB0380c;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFB0380c - Plasmodium falciparum
            (isolate 3D7)
          Length = 2010

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 184  KLYNLLSKSPI---TLITHANVNHKKKK*TVIMKEHNNSSNSITDTCVS 47
            K Y  ++K  +    ++ H    HKKKK T+I  ++NN++N+  +  +S
Sbjct: 1839 KNYKRINKKDVHINNILLHTYKQHKKKKSTIISSDNNNNNNNNAEDDIS 1887


>UniRef50_A1SGS5 Cluster: 5-oxoprolinase; n=3; Actinomycetales|Rep:
           5-oxoprolinase - Nocardioides sp. (strain BAA-499 /
           JS614)
          Length = 706

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -1

Query: 148 LITHANVNHKKKK*TVIMKEHNNSSNSITDTCVSEYRNWSKQLTT 14
           L  +AN  H+++   V+ +EH ++  S++   + EYR + + +TT
Sbjct: 167 LHAYANPEHEERMRAVLAEEHPDAVVSLSSEVLREYREYERAMTT 211


>UniRef50_Q9EME5 Cluster: AMV261; n=1; Amsacta moorei entomopoxvirus
           'L'|Rep: AMV261 - Amsacta moorei entomopoxvirus (AmEPV)
          Length = 401

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 27  LLQFLYSLTHVSVIELDELLCSFIITVHFFFL*LTFACVISVIGDLLSKLYNFILLVVFE 206
           L  F Y +T +++    EL+C  +  +  FF  + F+C+      +LS LYN  +   + 
Sbjct: 191 LFMFQYLITILNIDTHYELVCKILTYLICFFAYMLFSCINITSIVILSNLYNIKINKKYC 250

Query: 207 NMII 218
           N+ I
Sbjct: 251 NLYI 254


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,411,938
Number of Sequences: 1657284
Number of extensions: 6934343
Number of successful extensions: 18251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18238
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)