Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F07
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    27   1.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   2.5  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   5.7  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   7.5  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   9.9  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   9.9  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 195 VVFENMIIHWEGSTINKNSK 254
           +V ++ IIHWEG  IN+  +
Sbjct: 195 IVSQDTIIHWEGEPINREDE 214


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 132  FACVISVIGDLLSKLYNFILLVVFENMIIHW 224
            F+C I+++  LL+ L   +L+V   N+ +HW
Sbjct: 1003 FSCTITILMLLLAPLDFPVLIVWARNLSMHW 1033


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 302 NEWSCKHNYKLSILLLFRIFVY 237
           +E + K+NY+L   LLF + VY
Sbjct: 146 DELAIKNNYRLCFSLLFALLVY 167


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 310 MSNFHNYSLYSLKY*SIVLCCNPIVLVVFSIFLFLITFY 426
           M   +++ L    Y S+V C  P+V     +FL+ + +Y
Sbjct: 56  MEQVNSFLLGERDYKSLVGCTGPLVYPGGHVFLYTLLYY 94


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 108 HFFFL*LTFACVISVIGDLLSKLYNFILLVVF 203
           +FFF  LTF+  +S++ + L K    I  + F
Sbjct: 36  YFFFGSLTFSIEVSILKETLEKPLQIITFLFF 67


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 325 NYSLYSLKY*SIVLCCNP 378
           +YSL+ LK  SI++C NP
Sbjct: 44  SYSLHLLKSLSIIICENP 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,238
Number of Sequences: 5004
Number of extensions: 32772
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)