Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F07
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1353 + 36533795-36533827,36533904-36533993,36535595-365356...    27   5.6  

>01_06_1353 +
           36533795-36533827,36533904-36533993,36535595-36535681,
           36535775-36535843,36536472-36536552,36536641-36536712,
           36536814-36536874,36536960-36537062,36537223-36537318,
           36537394-36537440,36538052-36538299
          Length = 328

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 316 NFHNYSLYSLKY*SIVLCCNPIVLVVFSIFLFLITFYT 429
           +FH +  +S ++ +++L    +  +V S FL +ITFY+
Sbjct: 95  SFHPFIYHSKRFYTVLLWRRVLAFLVASQFLRIITFYS 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,207,190
Number of Sequences: 37544
Number of extensions: 162637
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)