Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F07
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)                30   1.1  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 27   5.8  
SB_10575| Best HMM Match : E-MAP-115 (HMM E-Value=3.2)                 27   5.8  
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)                     27   7.7  
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)                      27   7.7  

>SB_45258| Best HMM Match : RhoGEF (HMM E-Value=2.4e-05)
          Length = 322

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 211 IFSKTTNKIKLY-NLLSKSPITLITHANVNHKKKK*TVIMKEHNNSSNS 68
           +F K T ++K Y N L+  P+TL T      +  +    ++ H N  N+
Sbjct: 80  VFMKFTAQLKAYTNFLNNYPVTLATLQRCKEQNPQFRAFLRRHENQPNT 128


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/67 (28%), Positives = 26/67 (38%)
 Frame = -1

Query: 205 SKTTNKIKLYNLLSKSPITLITHANVNHKKKK*TVIMKEHNNSSNSITDTCVSEYRNWSK 26
           S+    +  Y   SKS +    H   N  K +    +  + NSS S     +  YRN SK
Sbjct: 534 SRVLASLHHYRNSSKSRVLASLHHYRNSSKSRVLASLHHYRNSSKSRVLASLHHYRNSSK 593

Query: 25  QLTTYSL 5
                SL
Sbjct: 594 SRVLASL 600


>SB_10575| Best HMM Match : E-MAP-115 (HMM E-Value=3.2)
          Length = 291

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 277 INCQYCYYLEFLFIVEPSQ*III-FSKTTNKIKLYNLLSKSPITLITHANVNHKKKK*TV 101
           IN  Y   L FLF+V+P +  ++  SK   K   +  ++  P      A+   K+ K + 
Sbjct: 99  INKSYSGVLLFLFVVKPEKPAVVKGSKRKEKGSEFADITNWPTPSELSASSGSKEAKPSP 158

Query: 100 IMKEHNNSS 74
           + K+ NN +
Sbjct: 159 VQKKENNEN 167


>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
          Length = 334

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 13  M*LVVCSSSCTHSHMYPLLSWMNYCVP 93
           M +++CS SC +  ++P ++W   CVP
Sbjct: 203 MLMLMCSPSCAYVDVFP-IAWSCRCVP 228


>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
          Length = 1183

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 390 YQHNGIATQHYRLIFEG 340
           YQHN I  + +R++FEG
Sbjct: 506 YQHNKITPEQFRVLFEG 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,026
Number of Sequences: 59808
Number of extensions: 220345
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)