Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F07
         (466 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U35234-1|AAC50299.1| 1948|Homo sapiens protein tyrosine phosphat...    29   7.9  

>U35234-1|AAC50299.1| 1948|Homo sapiens protein tyrosine phosphatase
            sigma protein.
          Length = 1948

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 420  SNKEKKNRKNYQHNGIATQHYRLIFEGIQGII 325
            SN E    KN   N IA  H+R+I + I+GI+
Sbjct: 1411 SNLEVNKPKNRYANVIAYDHFRVILQPIEGIM 1442


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,966,849
Number of Sequences: 237096
Number of extensions: 1062224
Number of successful extensions: 5537
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5537
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)