Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F07
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical pr...    27   6.6  
L23648-12|AAM48524.1|  117|Caenorhabditis elegans Hypothetical p...    27   6.6  
AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical ...    27   6.6  

>Z72503-7|CAA96597.1|  424|Caenorhabditis elegans Hypothetical
           protein C26C6.4a protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 302 NEWSCKHNYKLSILLLFRIFVYSRTFPVNYHILKNH 195
           N W  K ++  S+L++  IFV +   P  + IL  H
Sbjct: 10  NIWWPKKSFSFSVLVVLFIFVVAAALPFTFGILSPH 45


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 319 FHNYSLYSLKY*SIVLCCNPIVLVVFSIFLFLITFYTIRC 438
           F++ SL+  K    +L C  + L      LFL+ F T++C
Sbjct: 3   FNSISLFPTKLSLFLLFCKIMRLPTLLSLLFLVAFSTVKC 42


>Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical
           protein M7.12 protein.
          Length = 241

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
 Frame = +3

Query: 144 ISVIGDLLSKLY-NFILLVVFENMIIHWEGSTINKN 248
           +  IG++L++L+ +F  L   ++ ++H+E S++NKN
Sbjct: 123 VMTIGEILNELHESFWKLRPDQHTVLHFEISSVNKN 158


>L23648-12|AAM48524.1|  117|Caenorhabditis elegans Hypothetical
           protein F44B9.10 protein.
          Length = 117

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 379 IVLVVFSIFLFLITFYTIRCASGSVST 459
           IV + F  +  L+ +   RC SGS+ST
Sbjct: 13  IVFLSFKTYAQLVPYEEFRCGSGSIST 39


>AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical
           protein Y52B11A.4 protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 169 LSKSPITLITHANVNHKKKK*TVIMKEHNNSSNSITDTCVSEYRN 35
           ++K  +  +T+A+ +HK  K  V+       S+ I+    SEY+N
Sbjct: 220 VAKMTVNEMTNASTSHKTYKIYVVGDTGTGKSSLISQLITSEYKN 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,851,309
Number of Sequences: 27780
Number of extensions: 182742
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)