Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F07
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /...    27   4.7  
At2g37940.1 68415.m04657 expressed protein                             27   4.7  
At5g05910.1 68418.m00653 zinc finger (C3HC4-type RING finger) fa...    27   6.2  

>At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /
           PAP2-related
          Length = 305

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 319 FHNYSLYSLKY*SIVLCCNPIVLVVFSIFLFLITFYT 429
           FH + + S K  ++++ C  +  +V   FL +ITFY+
Sbjct: 96  FHPFIVKSKKIYTVLIWCRVLAFLVACQFLRVITFYS 132


>At2g37940.1 68415.m04657 expressed protein
          Length = 305

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 319 FHNYSLYSLKY*SIVLCCNPIVLVVFSIFLFLITFYT 429
           FH + L + K  ++++ C  +  +V   FL +ITFY+
Sbjct: 96  FHPFILKTKKIYTVLIWCRVLAFLVACQFLRVITFYS 132


>At5g05910.1 68418.m00653 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 151

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 19  LVVCSSSCTHS-HMYPLLSWM 78
           +VVC S C HS HM  + SW+
Sbjct: 109 VVVCLSKCNHSFHMNCIFSWL 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,848,872
Number of Sequences: 28952
Number of extensions: 150601
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)