Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F06
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 175 1e-44
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 172 8e-44
11_04_0329 - 16442298-16443734 29 1.8
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 27 7.3
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 27 7.3
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 27 7.3
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 7.3
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 9.7
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 26 9.7
05_01_0576 - 5130589-5131995 26 9.7
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 26 9.7
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 26 9.7
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 175 bits (425), Expect = 1e-44
Identities = 81/130 (62%), Positives = 101/130 (77%), Gaps = 2/130 (1%)
Frame = +3
Query: 18 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 371
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 372 QEIPGLTDGE 401
++PGLTD E
Sbjct: 121 NDLPGLTDTE 130
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 172 bits (419), Expect = 8e-44
Identities = 80/130 (61%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
Frame = +3
Query: 18 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 371
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 372 QEIPGLTDGE 401
++PGLTD E
Sbjct: 121 NDLPGLTDTE 130
>11_04_0329 - 16442298-16443734
Length = 478
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 379 ISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 272
+ CAP M LAS+ P + LRF S RRG
Sbjct: 77 LPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 162 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 266
VLR+ GND ++ G + NS + ++ + H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 132 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 299
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 221 DLAGSE-RASQTASAGMRLKEGSHINRSLLTLGKVIRQLSKGRNGHIPYRDSKLTR 275
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 132 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 299
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 224 DLAGSE-RASQTASAGVRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR 278
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 54 QKLF-EVVDEHKLRIFYEKR 110
+KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 72 VDEHKLRIFYEKRMGAEVDADLLGDEWKGYVL 167
++ + +RIF + + E D++ EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 54 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 149
+KL+ EV +LRI YEKR+ + D+ GDE
Sbjct: 492 KKLYKEVKAGERLRIDYEKRLNHLRNQDVKGDE 524
>05_01_0576 - 5130589-5131995
Length = 468
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 105 KRMGAEVDADLLGDEWKGYVLRVAGGN 185
+R G E+DADLL DE + GGN
Sbjct: 405 ERSGGELDADLLHDELVDDGVVAGGGN 431
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 339 LKG*HQQCNHEQTCVSS 289
L G H + NHEQTCV++
Sbjct: 358 LSGKHFRLNHEQTCVTA 374
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 204 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERK 296
++ + + R R+ M++GHS YRP G+ K
Sbjct: 432 IRDETMYDPRERIEMAQGHSLYRPSLLGQPK 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,195,788
Number of Sequences: 37544
Number of extensions: 231157
Number of successful extensions: 589
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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