BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0002_F06 (402 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 168 2e-42 SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 37 0.005 SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024) 29 1.4 SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6 SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6 SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6 SB_57604| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0 >SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) Length = 212 Score = 168 bits (408), Expect = 2e-42 Identities = 74/92 (80%), Positives = 83/92 (90%) Frame = +3 Query: 120 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 299 EV + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61 Query: 300 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 395 KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD Sbjct: 62 KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTD 93 >SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) Length = 796 Score = 37.1 bits (82), Expect = 0.005 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -2 Query: 266 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 96 A V QE A+ D L H ++L V+T + E+++ P + + HTL IE Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306 >SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024) Length = 848 Score = 29.1 bits (62), Expect = 1.4 Identities = 13/36 (36%), Positives = 25/36 (69%) Frame = +1 Query: 223 LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 330 L+++ + C KATLA D+V++ +GN+ ++ L+L Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507 >SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 103 Score = 26.6 bits (56), Expect = 7.6 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 252 KGHSCYRPRRDGERKRKSVRGC 317 KGH CY + G KR+ R C Sbjct: 18 KGHGCYAKQLSGFDKRQLTRSC 39 >SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 106 Score = 26.6 bits (56), Expect = 7.6 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 252 KGHSCYRPRRDGERKRKSVRGC 317 KGH CY + G KR+ R C Sbjct: 18 KGHGCYAKQLSGFDKRQLTRSC 39 >SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 5659 Score = 26.6 bits (56), Expect = 7.6 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -3 Query: 394 SVSPGISCAPLRTMTRAKTERLASTMQPRTDL 299 +V+PG + AP T+ T L ST+ P T + Sbjct: 3512 TVTPGSTAAPETTVAPGTTVALESTVAPETSI 3543 >SB_57604| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 631 Score = 26.2 bits (55), Expect = 10.0 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 102 EKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGV 218 EK+ G ++DADL D L V +D+ P+ +GV Sbjct: 413 EKKRGEDMDADLQQDAMSTEELEVIALSDRHIEPVFEGV 451 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,849,358 Number of Sequences: 59808 Number of extensions: 260831 Number of successful extensions: 580 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 507 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 580 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 715479706 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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