Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F06
         (402 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07881-1|AAA28871.1|  248|Drosophila melanogaster ribosomal prot...   239   1e-63
L02075-1|AAB05985.1|  248|Drosophila melanogaster ribosomal prot...   239   1e-63
L02074-4|AAB05982.1|  248|Drosophila melanogaster ribosomal prot...   239   1e-63
L01658-1|AAC34306.1|  248|Drosophila melanogaster ribosomal prot...   239   1e-63
AE014298-1078|AAN09218.1|  248|Drosophila melanogaster CG10944-P...   239   1e-63
AE014298-1079|AAN09219.1|  251|Drosophila melanogaster CG10944-P...   235   2e-62
L02074-3|AAB05984.1|  200|Drosophila melanogaster protein ( Dros...   181   3e-46
L02074-2|AAB05983.1|  200|Drosophila melanogaster protein ( Dros...   181   3e-46
AY058620-1|AAL13849.1|  217|Drosophila melanogaster LD31286p pro...   173   6e-44
AE014298-1080|AAF46288.1|  217|Drosophila melanogaster CG10944-P...   173   6e-44
AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-P...    46   1e-05
AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-P...    46   1e-05
BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p pro...    44   6e-05
BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p pro...    44   6e-05
AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA...    30   1.0  

>L07881-1|AAA28871.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  239 bits (585), Expect = 1e-63
 Identities = 107/126 (84%), Positives = 119/126 (94%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 378 IPGLTD 395
           IPGLTD
Sbjct: 121 IPGLTD 126


>L02075-1|AAB05985.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  239 bits (585), Expect = 1e-63
 Identities = 107/126 (84%), Positives = 119/126 (94%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 378 IPGLTD 395
           IPGLTD
Sbjct: 121 IPGLTD 126


>L02074-4|AAB05982.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  239 bits (585), Expect = 1e-63
 Identities = 107/126 (84%), Positives = 119/126 (94%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 378 IPGLTD 395
           IPGLTD
Sbjct: 121 IPGLTD 126


>L01658-1|AAC34306.1|  248|Drosophila melanogaster ribosomal protein
           S6 protein.
          Length = 248

 Score =  239 bits (585), Expect = 1e-63
 Identities = 107/126 (84%), Positives = 119/126 (94%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 378 IPGLTD 395
           IPGLTD
Sbjct: 121 IPGLTD 126


>AE014298-1078|AAN09218.1|  248|Drosophila melanogaster CG10944-PB,
           isoform B protein.
          Length = 248

 Score =  239 bits (585), Expect = 1e-63
 Identities = 107/126 (84%), Positives = 119/126 (94%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
           FPMKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 378 IPGLTD 395
           IPGLTD
Sbjct: 121 IPGLTD 126


>AE014298-1079|AAN09219.1|  251|Drosophila melanogaster CG10944-PC,
           isoform C protein.
          Length = 251

 Score =  235 bits (575), Expect = 2e-62
 Identities = 105/124 (84%), Positives = 117/124 (94%)
 Frame = +3

Query: 24  LNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFP 203
           LNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQGFP
Sbjct: 6   LNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFP 65

Query: 204 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIP 383
           MKQGVLT+ RVRLL+ KGHSCYRPRR GERKRKSVRGCIVDAN+SVLALV+++KG ++IP
Sbjct: 66  MKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIP 125

Query: 384 GLTD 395
           GLTD
Sbjct: 126 GLTD 129


>L02074-3|AAB05984.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score =  181 bits (441), Expect = 3e-46
 Identities = 85/116 (73%), Positives = 99/116 (85%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 365
           FPMKQGVLT+ R+RLL  K HSC+ PR +  RK K+VR   V+AN+S L LV+++K
Sbjct: 61  FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115


>L02074-2|AAB05983.1|  200|Drosophila melanogaster protein (
           Drosophila melanogasterribosomal protein S6 gene and two
           potential alternativelyspliced proteins, complete cds.
           ).
          Length = 200

 Score =  181 bits (441), Expect = 3e-46
 Identities = 85/116 (73%), Positives = 99/116 (85%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG  V+AD+LGDEWKGY LR+AGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 365
           FPMKQGVLT+ R+RLL  K HSC+ PR +  RK K+VR   V+AN+S L LV+++K
Sbjct: 61  FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115


>AY058620-1|AAL13849.1|  217|Drosophila melanogaster LD31286p
           protein.
          Length = 217

 Score =  173 bits (422), Expect = 6e-44
 Identities = 77/95 (81%), Positives = 88/95 (92%)
 Frame = +3

Query: 111 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 290
           MG  V+AD+LGDEWKGY LR+AGGNDKQGFPMKQGVLT+ RVRLL+ KGHSCYRPRR GE
Sbjct: 1   MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGE 60

Query: 291 RKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 395
           RKRKSVRGCIVDAN+SVLALV+++KG ++IPGLTD
Sbjct: 61  RKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTD 95


>AE014298-1080|AAF46288.1|  217|Drosophila melanogaster CG10944-PA,
           isoform A protein.
          Length = 217

 Score =  173 bits (422), Expect = 6e-44
 Identities = 77/95 (81%), Positives = 88/95 (92%)
 Frame = +3

Query: 111 MGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 290
           MG  V+AD+LGDEWKGY LR+AGGNDKQGFPMKQGVLT+ RVRLL+ KGHSCYRPRR GE
Sbjct: 1   MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGE 60

Query: 291 RKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 395
           RKRKSVRGCIVDAN+SVLALV+++KG ++IPGLTD
Sbjct: 61  RKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTD 95


>AE014298-1077|AAS65274.1|  135|Drosophila melanogaster CG33222-PA
           protein.
          Length = 135

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +3

Query: 225 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 365
           N R+RLL  K HSC+ PR +  RK K+VR   V+AN+S L LV+++K
Sbjct: 5   NRRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 50


>AE014298-1076|AAF46287.3|  135|Drosophila melanogaster CG11386-PA
           protein.
          Length = 135

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +3

Query: 225 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 365
           N R+RLL  K HSC+ PR +  RK K+VR   V+AN+S L LV+++K
Sbjct: 5   NRRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 50


>BT022735-1|AAY55151.1|  149|Drosophila melanogaster IP07614p
           protein.
          Length = 149

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = +3

Query: 231 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 365
           R+RLL  K HSC+ PR +  RK K+VR   V+AN+S L LV+++K
Sbjct: 21  RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 64


>BT022511-1|AAY54927.1|  147|Drosophila melanogaster IP07914p
           protein.
          Length = 147

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = +3

Query: 231 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 365
           R+RLL  K HSC+ PR +  RK K+VR   V+AN+S L LV+++K
Sbjct: 19  RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 62


>AE014298-854|AAF46133.1| 1399|Drosophila melanogaster CG14446-PA
            protein.
          Length = 1399

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 195  PACRYRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQ 64
            PA    +QH +H L+  R ++    + P   HR  GA A  P+Q
Sbjct: 1035 PASNLNKQHADHYLANERKDNALDYKPPVPPHRNVGARACLPVQ 1078


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,279,446
Number of Sequences: 53049
Number of extensions: 374134
Number of successful extensions: 871
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1170601320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)