Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F06
(402 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 203 3e-53
Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical pr... 27 5.0
AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical ... 27 5.0
AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical ... 27 5.0
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 27 6.7
U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical pr... 27 6.7
U00047-13|AAY43978.1| 301|Caenorhabditis elegans Hypothetical p... 27 6.7
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 27 6.7
Z54216-9|CAN86906.1| 155|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z54216-8|CAA90948.1| 101|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 26 8.8
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 26 8.8
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 203 bits (496), Expect = 3e-53
Identities = 93/126 (73%), Positives = 107/126 (84%)
Frame = +3
Query: 18 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
M+LN +YPATG QK FEV +E KLR+F+EKRM EV D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60
Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 377
FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG E
Sbjct: 61 FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120
Query: 378 IPGLTD 395
I GLTD
Sbjct: 121 IEGLTD 126
>Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 159 NLSIRRLEDLHQLQRPYAFHRRY 91
N+ +RRLE+L ++RP H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249
>AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 159 NLSIRRLEDLHQLQRPYAFHRRY 91
N+ +RRLE+L ++RP H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249
>AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical
protein ZK6.2 protein.
Length = 347
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 235 TRLLVRTPCFIGKPCLSLPPATRR 164
TR + CF+G+ C PP TR+
Sbjct: 37 TRTMPIKKCFLGENCFERPPFTRK 60
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 117 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 19
RP + HP LQ T +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203
>U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical
protein C45G9.6a protein.
Length = 542
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 327 HQQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPACRY 181
H+QC + C+S R C+ +G RD+ C + + + GS C Y
Sbjct: 417 HRQCLYHSDCISGQR----CTPTG----RDIATCETDISATIGSIQCFY 457
>U00047-13|AAY43978.1| 301|Caenorhabditis elegans Hypothetical
protein ZK418.11 protein.
Length = 301
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 332 PFSLSPGHCPQRC 370
P S +PG CPQRC
Sbjct: 13 PKSCNPGECPQRC 25
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 117 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 19
RP + HP LQ T +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203
>Z54216-9|CAN86906.1| 155|Caenorhabditis elegans Hypothetical
protein T24H10.7d protein.
Length = 155
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 42 ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
AT C QK + + E + ++ +EK G +DA+LL
Sbjct: 94 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 127
>Z54216-8|CAA90948.1| 101|Caenorhabditis elegans Hypothetical
protein T24H10.7c protein.
Length = 101
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 42 ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
AT C QK + + E + ++ +EK G +DA+LL
Sbjct: 40 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 73
>Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical
protein T24H10.7b protein.
Length = 299
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 42 ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
AT C QK + + E + ++ +EK G +DA+LL
Sbjct: 238 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 271
>Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical
protein T24H10.7a protein.
Length = 319
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 42 ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 140
AT C QK + + E + ++ +EK G +DA+LL
Sbjct: 258 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 291
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 26.2 bits (55), Expect = 8.8
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 318 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 166
C ++ TC+ + H VC K+G + R C P+ G C R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 26.2 bits (55), Expect = 8.8
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 318 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 166
C ++ TC+ + H VC K+G + R C P+ G C R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,168,140
Number of Sequences: 27780
Number of extensions: 182625
Number of successful extensions: 422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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