Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F06
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   172   6e-44
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             171   1e-43
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi...    29   1.5  
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    28   2.7  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    27   3.5  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   4.7  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    27   4.7  
At4g14160.3 68417.m02185 transport protein, putative similar to ...    27   6.2  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    27   6.2  
At4g14160.1 68417.m02184 transport protein, putative similar to ...    27   6.2  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  172 bits (419), Expect = 6e-44
 Identities = 82/130 (63%), Positives = 99/130 (76%), Gaps = 2/130 (1%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 371
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 372 QEIPGLTDGE 401
            ++PGLTD E
Sbjct: 121 NDLPGLTDTE 130


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  171 bits (417), Expect = 1e-43
 Identities = 81/130 (62%), Positives = 99/130 (76%), Gaps = 2/130 (1%)
 Frame = +3

Query: 18  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 197
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 198 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 371
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 372 QEIPGLTDGE 401
            ++PGLTD E
Sbjct: 121 SDLPGLTDTE 130


>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1155

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +3

Query: 57  KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 236
           K  E    +++R+   +R  AE+  +LLG + K   LR  G  D+    + Q  +  +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654

Query: 237 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 338
            + +  G + Y    D ++ +K       D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 132 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 299
           DL G E     L  AG   K+G  + + +LT   V   +SKG + + P RD +  R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 54  QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 149
           +KL+ EV DE KLR+ YE++       D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -1

Query: 183 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 10
           Y+   G H    R+L+DL   Q       R  AC H P  ++S I L    R+T  LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 39  PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 206
           P   CQ +  V D  +   FYEK  G E+       E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At4g14160.3 68417.m02185 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 620

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 341 LSPGHCPQRCTG 376
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 341 LSPGHCPQRCTG 376
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.1 68417.m02184 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 621

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 341 LSPGHCPQRCTG 376
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,674,062
Number of Sequences: 28952
Number of extensions: 170901
Number of successful extensions: 385
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)