Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F05
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    27   1.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   2.7  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   3.6  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   4.8  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.8  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    25   6.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.4  

>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 QTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQ 256
           +T + LA+    SD +  D +DP+H D+ +Q
Sbjct: 169 ETVAKLALENMDSDDIAADFTDPIHLDMESQ 199


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 235 NRIRKIPMNRIRKIPMHC*NRIRLHARC 152
           NR R++PM R R++ + C N      RC
Sbjct: 23  NRRRRVPMERRRRVVLACFNCKARKVRC 50


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +2

Query: 122 KDKRSPSLVSTARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
           K K      ST+   + +       + DP   D + P  RD S     DY  L  RD
Sbjct: 360 KRKHEDDESSTSTKSSRTTKTPFTRVGDPSQWDFASPALRDNSFNFEDDYGTLANRD 416


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  KYKNKEDSQAVIDDIVNDYNK 117
           KYK   + QA I ++VN +NK
Sbjct: 548 KYKEVHEKQAAIANMVNTFNK 568


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 64  NKEDSQAVIDDIVNDYNKGQ 123
           N+++  +VI D+++ YNKG+
Sbjct: 23  NEKEKNSVIPDVIDYYNKGR 42


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 441 DEVADWTMDGYRGVRDLSMWK 379
           D+  +W  D Y GV D+ ++K
Sbjct: 236 DQFGEWLEDNYPGVSDVEIYK 256


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 473 LTPCLISYDSVTKSLTGLWTVIGE*EI-CPC 384
           L  C++  + +  S+TGL T++ +    CPC
Sbjct: 205 LPTCVVCLERMDSSITGLITIVCQHTFHCPC 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,485
Number of Sequences: 5004
Number of extensions: 25990
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)