Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F05
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0128 - 11039565-11040119,11040727-11040997,11041123-110412...    27   8.4  

>10_06_0128 -
           11039565-11040119,11040727-11040997,11041123-11041217,
           11043553-11043642
          Length = 336

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 189 CTARTESVCMRAVETREGDRLSLPFVIIVDNVINNSLRVFLVLVF 55
           C  R+       +   +GD   +  +++V  +INNS ++F V+ F
Sbjct: 4   CMIRSRRCTRAMLIVEKGDDEEIQQLMVVRGIINNSSKIFRVVKF 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,551,455
Number of Sequences: 37544
Number of extensions: 169293
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)