Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F05
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019) 36 0.025
SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7) 27 6.5
>SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)
Length = 512
Score = 35.5 bits (78), Expect = 0.025
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
+H D +D +H D +D +H D + VH DY+ ++ D
Sbjct: 29 IHSDYTDTIHPDYTDIIHPDYTGIVHPDYTGIIHPD 64
Score = 34.3 bits (75), Expect = 0.057
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D +D +H D + +H DY+ ++ D
Sbjct: 178 TGIIHPDYTGIIHPDYTDIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 224
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H +D +H D +D +H D + +H DY+ +V D
Sbjct: 10 TGIIHPDYTGIIHSGYTDIIHSDYTDTIHPDYTDIIHPDYTGIVHPD 56
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 161 MQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLV 283
+ +D +H D +D +H D + VH D + +H DY+ ++
Sbjct: 29 IHSDYTDTIHPDYTDIIHPDYTGIVHPDYTGIIHPDYTGII 69
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 218 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIYPD 264
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 354 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIYPD 400
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 114 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 160
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 122 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 168
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 146 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 192
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 154 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 200
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 186 TGIIHPDYTDIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 232
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 210 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 256
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 290 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 336
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 298 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 344
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 346 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 392
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 426 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 472
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 434 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 480
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H +D +H D + +H DY+ ++ D
Sbjct: 50 TGIVHPDYTGIIHPDYTGIIHSGYTDIIHPDYTGIIHPDYTDIIYPD 96
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
+H D + +H D +D ++ D + +H DY+ ++ D
Sbjct: 77 IHPDYTGIIHPDYTDIIYPDYTGIIHPDYTGIIHPD 112
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
+H D +D ++ D + +H D + +H DY+ ++ D
Sbjct: 85 IHPDYTDIIYPDYTGIIHPDYTGIIHPDYTGIIHPD 120
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 98 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 144
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 130 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 176
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
++ D +D +H D + +H D + +H DY+ ++ D
Sbjct: 269 IYPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 304
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 306 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 352
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 322 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 368
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 330 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 376
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 442 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 488
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 458 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 504
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 205 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 240
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 277 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 312
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 285 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 320
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 185 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 421 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 456
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 106 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 152
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 162 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTDIIHPD 208
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 282 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 328
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 338 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 384
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 418 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 464
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 466 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTDIINPD 512
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +2
Query: 152 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 292
T + D ++ D + ++ D +D +H D + +H DY+ ++ D
Sbjct: 250 TGIIHPDYTGIIYPDFTGIIYPDYTDIIHPDYTGIIHPDYTGIIHPD 296
>SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 31.5 bits (68), Expect = 0.40
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 182 AVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRDRS 298
AV+RD S +R+ ++ V+RD S +R+ + V RDRS
Sbjct: 48 AVYRDRSHVTNRETTNAVYRDRSHVTNRETTNAVYRDRS 86
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 182 AVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRDRS 298
AV+RD S +R+ ++ V+RD S +R+ + + RD S
Sbjct: 64 AVYRDRSHVTNRETTNAVYRDRSHVTNRETTNAINRDGS 102
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 170 PSACALLRPEKVTVCPCPLL*SLTMSSITACESSLF 63
PS C L P VT+C PL + +S + CE +F
Sbjct: 1408 PSKCKLDDPCDVTLCSHPLQKCILVSGVPRCECPMF 1443
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 265 PMNLSRKIPMNRIRKIPMNRIRK 197
P N +RK P NRIRK+ NR RK
Sbjct: 71 PHNRNRKEPGNRIRKVEHNRNRK 93
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +2
Query: 179 LAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVC 286
+ VH LS VH LS VH LS VH SV VC
Sbjct: 352 VTVHYCLSVTVHYCLSVTVHCCLSVTVHYCLSVTVC 387
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 340 PIYSTGSLGGHSSFP-HGQIS-HSPITVHSPVSDFVTES 450
P+ + HSS H +S HSP++ HSPVS+ + S
Sbjct: 1303 PVSEHSRVSEHSSVSEHSSVSEHSPVSEHSPVSEHFSVS 1341
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 119 GKDKRSPSLVSTARMQTDSVLAVHRDLSDPVHRDLSDP 232
G D + PS TA + + L+ DLS H + SDP
Sbjct: 175 GVDSKDPSNQCTASLSNQTDLSNQTDLSSQSHLNSSDP 212
>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
Length = 165
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 188 HRDLSDPVHRDLSDPVHRDLSAQVHRD 268
HR+ + P + + + P HRD + Q HR+
Sbjct: 39 HRNTTTPRYHNTAIPQHRDTATQQHRN 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.310 0.129 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,123
Number of Sequences: 59808
Number of extensions: 213066
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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