Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F05
         (498 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC100934-1|AAI00935.1|  288|Homo sapiens apolipoprotein A-I bind...    31   2.2  
BC100933-1|AAI00934.1|  288|Homo sapiens apolipoprotein A-I bind...    31   2.2  
BC100931-1|AAI00932.1|  288|Homo sapiens apolipoprotein A-I bind...    31   2.2  
BC056917-1|AAH56917.1|  260|Homo sapiens APOA1BP protein protein.      31   2.2  
AL365181-7|CAI13051.1|  288|Homo sapiens apolipoprotein A-I bind...    31   2.2  
AL365181-6|CAI13050.1|  260|Homo sapiens apolipoprotein A-I bind...    31   2.2  
AL365181-5|CAI13049.1|  245|Homo sapiens apolipoprotein A-I bind...    31   2.2  
AJ315849-1|CAC86580.1|  288|Homo sapiens apoA-I binding protein ...    31   2.2  
L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated pr...    29   9.0  

>BC100934-1|AAI00935.1|  288|Homo sapiens apolipoprotein A-I binding
           protein protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>BC100933-1|AAI00934.1|  288|Homo sapiens apolipoprotein A-I binding
           protein protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>BC100931-1|AAI00932.1|  288|Homo sapiens apolipoprotein A-I binding
           protein protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>BC056917-1|AAH56917.1|  260|Homo sapiens APOA1BP protein protein.
          Length = 260

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>AL365181-7|CAI13051.1|  288|Homo sapiens apolipoprotein A-I binding
           protein protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>AL365181-6|CAI13050.1|  260|Homo sapiens apolipoprotein A-I binding
           protein protein.
          Length = 260

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>AL365181-5|CAI13049.1|  245|Homo sapiens apolipoprotein A-I binding
           protein protein.
          Length = 245

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>AJ315849-1|CAC86580.1|  288|Homo sapiens apoA-I binding protein
           protein.
          Length = 288

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 52  VKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAHA 165
           VKY ++E++QAV  ++ N+Y     Q +  +GL+ A A
Sbjct: 57  VKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATA 94


>L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated protein
            1B protein.
          Length = 2468

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 13   IENKPPTKPEVYFVKYKNKEDSQAVIDDIVNDYNKGQ 123
            I  K  + PEV    Y+  E S+ ++DDI N Y+  +
Sbjct: 1959 ISEKTTSPPEVSGYSYEKTERSRRLLDDISNGYDDSE 1995


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,523,621
Number of Sequences: 237096
Number of extensions: 962230
Number of successful extensions: 1423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)