Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F05
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical ...    31   0.46 
Z69716-3|CAA93529.1|  335|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL033536-8|CAA22136.2|  178|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical
           protein F42G8.8 protein.
          Length = 487

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 116 KGKDKRSPSLVSTARMQTDS-VLAVHRDLSDPVHRDLSDPVHRDLSAQVH 262
           KGK+K+ P+L++   +  D   L +   L   +  D+SDP++  L+ QV+
Sbjct: 372 KGKNKKMPALITDILISMDDRFLYISFWLHGDIQYDISDPLNVKLNCQVY 421


>Z69716-3|CAA93529.1|  335|Caenorhabditis elegans Hypothetical
           protein C04B4.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 352 TGSLGGHSSFPHGQISHSPI 411
           TGS GG  SFP  ++ HSPI
Sbjct: 52  TGSFGG-KSFPQEKVKHSPI 70


>AL033536-8|CAA22136.2|  178|Caenorhabditis elegans Hypothetical
           protein Y53C10A.2 protein.
          Length = 178

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 16  ENKPPTKPEVYFVKYKNKEDSQAVIDDIVNDYNKGQ 123
           EN+PP   EV   K +  ++S   ++D +N+  +G+
Sbjct: 103 ENQPPPSFEVVMAKIRGIQESLKNMEDQMNEEERGK 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,191
Number of Sequences: 27780
Number of extensions: 149635
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)