Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F05
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 489 KFQDLVDTLSYII*FSDEVADWTMDGYRGVRDL 391
           K Q L+  L   + ++D    W +  Y GVRDL
Sbjct: 66  KNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDL 98


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 73  DSQAVIDDIVNDYNK 117
           D++ + DD++++YNK
Sbjct: 28  DAKRLYDDLLSNYNK 42


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 73  DSQAVIDDIVNDYNK 117
           D++ + DD++++YNK
Sbjct: 28  DAKRLYDDLLSNYNK 42


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 73  DSQAVIDDIVNDYNK 117
           D++ + DD++++YNK
Sbjct: 24  DAKRLYDDLLSNYNK 38


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 244 IPMNRIRKIPMNRIRKIPMHC 182
           +P  RIRK+P   +   P+ C
Sbjct: 640 LPPKRIRKMPSMPLLPRPISC 660


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,531
Number of Sequences: 438
Number of extensions: 1814
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)