Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F05
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71910.1 68414.m08313 expressed protein                             31   0.43 
At5g05840.1 68418.m00642 expressed protein contains Pfam profile...    29   1.7  
At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein con...    27   9.3  
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored...    27   9.3  

>At1g71910.1 68414.m08313 expressed protein
          Length = 173

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 358 SLGGHSSFPHGQISHSPITVHSPVSDFVTESYD 456
           SL  H S  H  +   P+  HSPV+ F  + YD
Sbjct: 15  SLASHDSSHHSGLDSPPLWKHSPVTSFRRKDYD 47


>At5g05840.1 68418.m00642 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620);
           expression supported by MPSS
          Length = 439

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 188 HRDLSDPVHRDLSD-PVHRDLSAQVHRDYSVLVCRDRS 298
           H D  +P+H+D+ D P+   ++  + + Y   V  DR+
Sbjct: 91  HNDYENPIHKDIKDQPLEMSMAQYIVKQYIAAVGGDRA 128


>At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966)  [Prunus serotina]
          Length = 510

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 367 GHSSFPHGQISHSPITVHSPVSDFVTESYDIRQG 468
           G+SS     + H+ I  H+ VSD   + Y  +QG
Sbjct: 228 GNSSTEPYIVGHNVILTHATVSDIYRKKYKAKQG 261


>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 501

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 25  PPTKPEVYFVKYKNKEDSQAVIDDIVNDYNKGQGQTVTFSGLNSAH 162
           P   P V F   +NK D  A ++ +++  +  + +TVTF     AH
Sbjct: 357 PRENPSVKFNYLENKADLDACLEMVLHLQHVARSETVTFFLGTQAH 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,513,015
Number of Sequences: 28952
Number of extensions: 139392
Number of successful extensions: 327
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)