Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F04
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    28   1.6  
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr...    26   6.6  

>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 159 NSDVH*LFLLTHIKLRNFNIEFILERESARKY 254
           N ++H +FL+T   L  F + F++ER + ++Y
Sbjct: 172 NREIH-IFLITGFNLIAFGLTFVMERYNKKRY 202


>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical protein
            W08D2.7 protein.
          Length = 1026

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 338  IIERRRCISFSQNEY*FRSCMKHIKRDVIFARALSL 231
            +I   + ++  + E  F    K++KRD++FA +L L
Sbjct: 991  MINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,685,185
Number of Sequences: 27780
Number of extensions: 113183
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)