Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F03
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   0.46 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    24   9.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    24   9.8  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 7   GYDDSCVINIRNFKLNNNCR 66
           G D+ C++ + NF+LN+ CR
Sbjct: 520 GTDERCLVCLSNFELNDECR 539


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 98  VPRWRLCYHYKRQLLFN 48
           VP WR  +HY   +L N
Sbjct: 117 VPAWRSVHHYGEDVLLN 133


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 6/26 (23%), Positives = 18/26 (69%)
 Frame = +3

Query: 237 IFFRVQCYSYLVYRKSIFKRVTSYIY 314
           +F+ ++C +Y++ +  +  + TS++Y
Sbjct: 105 VFYLLECCTYILEQMQVVTKNTSHLY 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,859
Number of Sequences: 5004
Number of extensions: 22895
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)