Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F03
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35891| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=1.9)              27   7.3  
SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)                     27   7.3  

>SB_35891| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=1.9)
          Length = 138

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 216 VSLQYLYIFFRVQCYSYLVYRKSIFKRVT 302
           V+L  ++  FRV  Y Y+ +R +++K ++
Sbjct: 28  VTLAVVFFVFRVLVYPYMYWRFAVYKNIS 56


>SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 674

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 62  VVYSDNKAAILVRTRPRLDRE 124
           V   DNK  +L RTRP LDRE
Sbjct: 598 VFQMDNKTGVLTRTRP-LDRE 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,386
Number of Sequences: 59808
Number of extensions: 165005
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)