Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F03
         (396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004866-1|AAO45222.1| 1128|Drosophila melanogaster LD43531p pro...    28   5.2  
AF129433-1|AAD21090.1|  883|Drosophila melanogaster histone deac...    28   5.2  
AE014298-2131|AAN09662.1| 1138|Drosophila melanogaster CG6170-PC...    28   5.2  
AE014298-2130|AAN09661.1| 1135|Drosophila melanogaster CG6170-PB...    28   5.2  
AE014298-2129|AAF48443.2| 1128|Drosophila melanogaster CG6170-PA...    28   5.2  

>BT004866-1|AAO45222.1| 1128|Drosophila melanogaster LD43531p
           protein.
          Length = 1128

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 143 NTTRLSVRGRDAGVCVPRWRLCYHYKRQLLFN 48
           N  RL V   +  + VP +++CY Y  Q+L +
Sbjct: 514 NAARLQVLRAETKLSVPSFKVCYAYDAQMLLH 545


>AF129433-1|AAD21090.1|  883|Drosophila melanogaster histone
           deacetylase HDA2 protein.
          Length = 883

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 143 NTTRLSVRGRDAGVCVPRWRLCYHYKRQLLFN 48
           N  RL V   +  + VP +++CY Y  Q+L +
Sbjct: 439 NAARLQVLRAETKLSVPSFKVCYAYDAQMLLH 470


>AE014298-2131|AAN09662.1| 1138|Drosophila melanogaster CG6170-PC,
           isoform C protein.
          Length = 1138

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 143 NTTRLSVRGRDAGVCVPRWRLCYHYKRQLLFN 48
           N  RL V   +  + VP +++CY Y  Q+L +
Sbjct: 524 NAARLQVLRAETKLSVPSFKVCYAYDAQMLLH 555


>AE014298-2130|AAN09661.1| 1135|Drosophila melanogaster CG6170-PB,
           isoform B protein.
          Length = 1135

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 143 NTTRLSVRGRDAGVCVPRWRLCYHYKRQLLFN 48
           N  RL V   +  + VP +++CY Y  Q+L +
Sbjct: 521 NAARLQVLRAETKLSVPSFKVCYAYDAQMLLH 552


>AE014298-2129|AAF48443.2| 1128|Drosophila melanogaster CG6170-PA,
           isoform A protein.
          Length = 1128

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 143 NTTRLSVRGRDAGVCVPRWRLCYHYKRQLLFN 48
           N  RL V   +  + VP +++CY Y  Q+L +
Sbjct: 514 NAARLQVLRAETKLSVPSFKVCYAYDAQMLLH 545


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,611
Number of Sequences: 53049
Number of extensions: 221081
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)