Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F03
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65205.1 68418.m08201 short-chain dehydrogenase/reductase (SD...    28   2.6  

>At5g65205.1 68418.m08201 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198 short
           chain dehydrogenase/reductase SDR family
          Length = 285

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  KQQLSFIVITKPPSWYAHARVSTANA 128
           K+ +S ++   PP+WY+  R+ST  A
Sbjct: 234 KETVSVVLKKNPPAWYSTGRLSTVMA 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,744,925
Number of Sequences: 28952
Number of extensions: 104757
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)