Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F02
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    43   5e-06
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    28   0.16 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   7.8  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 43.2 bits (97), Expect = 5e-06
 Identities = 24/73 (32%), Positives = 38/73 (52%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAMKXXXXXXXXXXX 188
           IQ T AVA+A +I +L +T   L++  I+  GAG A +GIA   V  M            
Sbjct: 273 IQGTGAVALAAIIGALHVTKSPLTEQRIMIFGAGTAGVGIANQIVAGMVTDGLSLDKARG 332

Query: 189 XIWMVDSRWLIVK 227
            ++M+D   L+++
Sbjct: 333 NLFMIDRCGLLLE 345


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 0.16
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 6   RIQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLG 125
           R+   AAVA AG++    + G++L Q + VF   GE SLG
Sbjct: 181 RLTPFAAVASAGVLNVFLMRGEELRQGIDVFDKEGE-SLG 219


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 3    TRIQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEA---SLGIA 131
            T+     + AVA ++  +   G +  QN+++ + +GE     LGIA
Sbjct: 2608 TQTNYARSTAVASVLGHVLGLGDRHGQNILIDKTSGEVIHIDLGIA 2653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,744
Number of Sequences: 5004
Number of extensions: 8322
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)