Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F02
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 66 3e-12
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 62 5e-11
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 62 5e-11
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 56 5e-09
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162... 27 2.8
12_02_0526 - 20032206-20033106,20034853-20035181 26 4.8
01_06_1411 + 37127098-37128279 26 4.8
09_02_0223 + 5977138-5977459,5979842-5980842 25 6.4
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 25 6.4
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 25 6.4
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 66.5 bits (155), Expect = 3e-12
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAM-KXXXXXXXXXX 185
IQ TA+V +AGLIA+L++ G L+ + +F GAGEA GIAEL + M K
Sbjct: 286 IQGTASVVLAGLIAALKVVGGTLADHTYLFLGAGEAGTGIAELIALEMSKQTEIPINDCR 345
Query: 186 XXIWMVDSRWLIVKNRPE 239
+W+VDSR LIV++R E
Sbjct: 346 KKVWLVDSRGLIVESRKE 363
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 62.5 bits (145), Expect = 5e-11
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAM-KXXXXXXXXXX 185
IQ TA+V ++GL+A+L++ G LS++ +F GAGEA GIAEL + + +
Sbjct: 277 IQGTASVVLSGLVAALKLVGGSLSEHSYLFLGAGEAGTGIAELIALEISRQTKAPIEECR 336
Query: 186 XXIWMVDSRWLIVKNRPE 239
IW+VDS+ LIV +R E
Sbjct: 337 KKIWLVDSKGLIVSSRKE 354
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 62.5 bits (145), Expect = 5e-11
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAM-KXXXXXXXXXX 185
IQ TA+V +AGL++SL++ G L+++ +F GAGEA GIAEL + + K
Sbjct: 355 IQGTASVVLAGLLSSLKVVGGTLAEHTYLFLGAGEAGTGIAELIALEISKQTKAPIEECR 414
Query: 186 XXIWMVDSRWLIVKNRPE 239
+W++DS+ LIV +R E
Sbjct: 415 KKVWLLDSKGLIVNSRKE 432
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 55.6 bits (128), Expect = 5e-09
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAMKXXXXX-XXXXX 185
IQ TAAV +AGLIA+ + L+ + +F GAGEA GIAEL + +
Sbjct: 289 IQGTAAVVLAGLIAAQKFVSGTLADHTFLFFGAGEAGTGIAELVALEISNQSKVPVEDAR 348
Query: 186 XXIWMVDSRWLIVKNRPE 239
IW++DS+ LIV +R +
Sbjct: 349 KKIWLLDSKGLIVSSRKD 366
>11_01_0208 -
1628020-1628117,1628282-1628325,1628790-1628878,
1628986-1629030,1629397-1629504,1629650-1629735,
1629870-1629957,1630275-1630445,1630718-1630793,
1630877-1630926,1631035-1631097,1631201-1631254,
1631398-1631500,1631626-1631728,1632038-1632098,
1632186-1632226,1632375-1632453
Length = 452
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 9 IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAMK 155
+ + +A + ++A ITG L QN V QG A+ GIA + K
Sbjct: 348 VALYSAAMIKSVLAITIITGTSLLQNKAVPQGQRGAANGIATTAMSLFK 396
>12_02_0526 - 20032206-20033106,20034853-20035181
Length = 409
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 203 HHPDAAARLRLRRTPGLHRHHAQ-LRYTQRSLPSALEHNDIL 81
HH A A + G H HH+ + + S+P L+H IL
Sbjct: 261 HHHHAIATMDGSSLIGDHHHHSSSILFGGASVPPLLDHQTIL 302
>01_06_1411 + 37127098-37128279
Length = 393
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 233 PVLHDQPSRVHHPDAAARLRLRRTPGLHRHHAQLRYTQRSLPSAL 99
P+LH P + H D + R LR L RH + R+LPS L
Sbjct: 118 PLLHPLPRQELHLDPSLRRALRSWHRLRRHDPGV---LRNLPSLL 159
>09_02_0223 + 5977138-5977459,5979842-5980842
Length = 440
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 215 PSRVHHPDAAARLRLRRTPGLHRHH 141
P+ HHPDAAA + G H HH
Sbjct: 2 PTDHHHPDAAAAAAGK---GAHHHH 23
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 221 DQPSRVHHPDA-AARLRLRRTPGLHRHHAQLRYTQRSL 111
D+P +A AA+LR+ + LH HH++ YT+ +L
Sbjct: 9 DKPEDAAAAEAKAAKLRVLQAQVLHNHHSR-TYTKEAL 45
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 233 PVLHDQPSRVHHPDAAARLRLRRTPGLH 150
PV+ P+ V HP A TPG+H
Sbjct: 1369 PVISTSPTMVFHPPAYQYAGFPFTPGVH 1396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,457,047
Number of Sequences: 37544
Number of extensions: 76402
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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