Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F02
         (249 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-10
SB_41749| Best HMM Match : Homeobox (HMM E-Value=4.1e-29)              28   1.3  
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    27   1.8  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       26   4.1  
SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)                    26   4.1  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      26   4.1  
SB_9701| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.4  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 37/80 (46%), Positives = 46/80 (57%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAMKXXXXXXXXXXX 188
           IQ TAAVAVAG++ASL+IT  +LS   IVFQGAG       +      +           
Sbjct: 317 IQGTAAVAVAGVLASLKITKTRLSDQRIVFQGAGRHR--YCKPASPGHEEGSLTEEQAKK 374

Query: 189 XIWMVDSRWLIVKNRPEGGL 248
            IW+VDSR L+VK+R  GGL
Sbjct: 375 KIWLVDSRGLVVKDRDCGGL 394


>SB_41749| Best HMM Match : Homeobox (HMM E-Value=4.1e-29)
          Length = 269

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 203 HHPDAAARLRLRRTPGLHRHHAQLRYTQR 117
           H+PD AAR  L R  GL     Q+ +  R
Sbjct: 97  HYPDVAARSELSRRTGLSESQVQIWFQNR 125


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 215 PSRVHHPDAAARLRLRRTPGLHRHHAQLRYTQR-SLPSALEH 93
           P ++ HP     L+ +      +HH QL+Y QR      LEH
Sbjct: 115 PQQLEHPQQLGYLQQQENLQPLKHHQQLKYLQRVQYLQQLEH 156


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   TRIQVTAAVAVAGLIASLRITGKKLSQN 86
           T ++VTA   +  ++    +TGKKL QN
Sbjct: 360 TSLEVTAGGKLYNVVVDSEVTGKKLLQN 387


>SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 194 DAAARLRLRRTPGLHRHHAQLRYTQRSLPSALEHN 90
           +AA  L   R PG   HH + R     L SALEH+
Sbjct: 154 EAAKNLGCTRVPG---HHNKYRQVLEFLASALEHD 185


>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
          Length = 520

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 233 PVLHDQPSRVHHPDAAARLRLRRTPGLHRH 144
           P +H    R+H PD +  LRL+R   L RH
Sbjct: 275 PDVHADVQRIH-PDRSLSLRLQRAGPLGRH 303


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 206 VHHPDAAARLRLRRTPGLHRHHAQLRYTQRSLPSA-LEHN 90
           V+   +A+   L +    H+HH QL+Y+  S+ SA L+H+
Sbjct: 51  VYSVSSASLQHLHQRHRHHQHHHQLQYSVYSVSSASLQHH 90


>SB_9701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 65  GQEALTECHCVPRRWGGFAGYSG 133
           G+  +T    VP+RWG FA Y G
Sbjct: 163 GERGITVLE-VPQRWGRFAEYEG 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,755,842
Number of Sequences: 59808
Number of extensions: 70878
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)