Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F02
         (249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    71   1e-13
Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    25   5.4  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    25   5.4  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 40/75 (53%), Positives = 46/75 (61%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAMKXXXXXXXXXXX 188
           IQ TAAV VAGL+AS RIT KKLSQ  IVF GAG A+ G+AE+CV  M            
Sbjct: 308 IQGTAAVVVAGLLASTRITKKKLSQERIVFLGAGGAATGVAEMCVRQMMDEGLSEEEACG 367

Query: 189 XIWMVDSRWLIVKNR 233
            I+MVD   LI  +R
Sbjct: 368 RIYMVDIEGLITTSR 382


>Z80215-7|CAB02274.1|  674|Caenorhabditis elegans Hypothetical
           protein C36B1.9 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 209 RVHHPDAAARLRLRRTPGLHRHHAQLRYTQRSLPSALEHNDI 84
           R    D    LR RRT    R    +R     LP  L+H+D+
Sbjct: 376 RQEERDLEMHLRFRRTLDQDRDRESMRRVADGLPPILDHDDV 417


>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 224 HDQPSRVHH-PDAAARLRLRRTPGLHRHHAQLRYTQR 117
           H QP+  +H PD  AR  + +   L + H    YT+R
Sbjct: 51  HVQPASANHVPDQIARFNVIKPDRLAKRHNPQLYTKR 87


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 233 PVLHDQPSRVHHPDAAARLRLRRTPGLHRHHA 138
           P   + P+R H   + + +R +R+  + RHHA
Sbjct: 806 PKRRNSPARQHRSRSKSAVRSQRSLSVSRHHA 837


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 233 PVLHDQPSRVHHPDAAARLRLRRTPGLHRHHA 138
           P   + P+R H   + + +R +R+  + RHHA
Sbjct: 804 PKRRNSPARQHRSRSKSAVRSQRSLSVSRHHA 835


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,083,844
Number of Sequences: 27780
Number of extensions: 50276
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)