Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F02
         (249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   2.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   4.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   4.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   5.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   9.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = -2

Query: 212 SRVHHPDAAARLRLRRTPGLHRHHAQLRYTQRSLPSALE 96
           S VH        R         HH    +TQ  + +ALE
Sbjct: 383 SSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALE 421


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 212 SRVHHPDAAARLRLRRTPGLHRHHAQLRY 126
           S V  PD+A   R+    GLH   A  R+
Sbjct: 389 SIVSSPDSARHQRIGGCNGLHTTTAHNRF 417


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 192 IWMVDSRWLIVKNRPEG 242
           +W+V  + L   N PEG
Sbjct: 259 VWIVTEQALDASNAPEG 275


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 200 HPDAAARLRLRRTP 159
           +PD    +RLRR P
Sbjct: 200 YPDITYEIRLRRRP 213


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 212 SRVHHPDAAARLRLRRTPGLHRHHAQLRYTQ 120
           S++HH        ++   G H+  AQ ++ Q
Sbjct: 166 SQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQ 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,420
Number of Sequences: 438
Number of extensions: 544
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)