Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F02
         (249 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11670.1 68418.m01364 malate oxidoreductase, putative similar...    68   8e-13
At1g79750.1 68414.m09304 malate oxidoreductase, putative similar...    65   5e-12
At5g25880.1 68418.m03071 malate oxidoreductase, putative similar...    65   7e-12
At2g19900.1 68415.m02326 malate oxidoreductase, putative similar...    62   4e-11
At4g00570.1 68417.m00080 malate oxidoreductase, putative similar...    43   2e-05
At4g01650.1 68417.m00214 expressed protein                             26   3.0  
At4g18600.1 68417.m02755 expressed protein                             25   7.0  
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    25   7.0  
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    25   9.2  
At4g38550.1 68417.m05458 expressed protein                             25   9.2  

>At5g11670.1 68418.m01364 malate oxidoreductase, putative similar to
           NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME)
           (SP|P12628) {Phaseolus vulgaris}
          Length = 588

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAM-KXXXXXXXXXX 185
           IQ TA+V +AGLIA+ ++ GKKL+ +  +F GAGEA  GIAEL  + + K          
Sbjct: 304 IQGTASVVLAGLIAAQKVLGKKLADHTFLFLGAGEAGTGIAELIALKISKETGAPITETR 363

Query: 186 XXIWMVDSRWLIVKNRPE 239
             IW+VDS+ LIV +R E
Sbjct: 364 KKIWLVDSKGLIVSSRKE 381


>At1g79750.1 68414.m09304 malate oxidoreductase, putative similar to
           malate oxidoreductase (NADP-dependent malic enzyme)
           GB:P34105 (Populus balsamifera subsp. trichocarpa)
          Length = 646

 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAM-KXXXXXXXXXX 185
           IQ TA+V +AGLIA+LR  G  LS +  +F GAGEA  GIAEL  + + K          
Sbjct: 362 IQGTASVVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIPLEEAR 421

Query: 186 XXIWMVDSRWLIVKNRPE 239
             IW+VDS+ LIV +R E
Sbjct: 422 KNIWLVDSKGLIVSSRKE 439


>At5g25880.1 68418.m03071 malate oxidoreductase, putative similar to
           NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME)
           (SP:P12628) {Phaseolus vulgaris}
          Length = 588

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAM-KXXXXXXXXXX 185
           IQ TA+V +AGLIA+ ++ GK L+ +  +F GAGEA  GIAEL  + + K          
Sbjct: 304 IQGTASVVLAGLIAAQKVLGKSLADHTFLFLGAGEAGTGIAELIALKISKETGKPIDETR 363

Query: 186 XXIWMVDSRWLIVKNRPE 239
             IW+VDS+ LIV  R E
Sbjct: 364 KKIWLVDSKGLIVSERKE 381


>At2g19900.1 68415.m02326 malate oxidoreductase, putative similar to
           NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME)
           (SP:P51615) {Vitis vinifera}
          Length = 581

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELCVMAM-KXXXXXXXXXX 185
           IQ TA+V +AGL+++ ++T   L+++  +F GAGEA  GIAEL  + M K          
Sbjct: 297 IQGTASVVLAGLVSAQKLTNSPLAEHTFLFLGAGEAGTGIAELIALYMSKQMNASVEESR 356

Query: 186 XXIWMVDSRWLIVKNRPE 239
             IW+VDS+ LIV +R +
Sbjct: 357 KKIWLVDSKGLIVNSRKD 374


>At4g00570.1 68417.m00080 malate oxidoreductase, putative similar to
           NAD-dependent malic enzyme 59 kDa isoform, mitochondrial
           precursor (EC 1.1.1.39) (NAD-ME) (SP:P37225) {Solanum
           tuberosum}
          Length = 607

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = +3

Query: 9   IQVTAAVAVAGLIASLRITGKKLSQNV---IVFQGAGEASLGIAELCVMAM-KXXXXXXX 176
           +Q TA VA+AGL+ ++R  G+ +S  V   IV  GAG A LG+ ++ V A+ +       
Sbjct: 303 VQGTAGVALAGLLGTVRAQGRPISDFVNQKIVVVGAGSAGLGVTKMAVQAVARMAGISES 362

Query: 177 XXXXXIWMVDSRWLIVKNR 233
                 +++D   L+   R
Sbjct: 363 EATKNFYLIDKDGLVTTER 381


>At4g01650.1 68417.m00214 expressed protein 
          Length = 288

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 233 PVLHDQPSRVHHPDAAARLRLRRTPGLHRHHA 138
           P+L D  S  HHP AAA   L  T GL   H+
Sbjct: 5   PILLDFSSAFHHPRAAA---LATTSGLTNSHS 33


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 15  VTAAVAVAGLIASLRITGKKLSQNVIVFQGAGEASLGIAELC 140
           +  AV VAGLI  LR  G     +  VF G  E     A  C
Sbjct: 33  ILGAVEVAGLIGILRQLGDLAEFSAEVFNGLQEEVTVTASRC 74


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
            MAP3K epsilon protein kinase [Arabidopsis thaliana]
            gi|3549652|emb|CAA12272
          Length = 1368

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 212  SRVHHPDAAARLR-LRRTPGLHRHHAQLR--YTQRSLPSALEH 93
            SR+ H DA ARL  L+    ++ HH + +    +  LP  L++
Sbjct: 1292 SRLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPQKLQN 1334


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 215 PSRVHHPDAAARLRLRRTPGLHRHHAQLRYTQRSL 111
           PS  H PD+A  LR +    L +HH  +     +L
Sbjct: 38  PSPDHQPDSAGSLRRQIGQMLIKHHQSIDRNNHAL 72


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 33  VAGLIASLRITGKKLSQNVIVFQ 101
           VAG +  L + G KL++N+ +FQ
Sbjct: 575 VAGRLGQLEMKGSKLNKNLDLFQ 597


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,946,736
Number of Sequences: 28952
Number of extensions: 48578
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)