Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E24
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   120   1e-28
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    31   0.14 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   2.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.0  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  120 bits (289), Expect = 1e-28
 Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
 Frame = +1

Query: 40  SSRHLFLTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAAD 219
           SS +  +    R   S L L EH    LSPA+ +A+ AAK+ GG++   V+G      + 
Sbjct: 14  SSSNFKINCGRRHWFSVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQ 73

Query: 220 KIAKA-NGVAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPATAFGKAILPRVA 396
           K+AK+ N + KV+  E+ +++    + I  ++    K+   +H+ +  +  GK ++PR+A
Sbjct: 74  KVAKSVNDLKKVIYVENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPRLA 133

Query: 397 AKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVR 531
           A  DV  I+DIIGV  A+TFVR  YAGN  +T+  KDP+K++TVR
Sbjct: 134 AMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTKDPIKIVTVR 178


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 456 KGVSIFDTDNISDR*HIKFGSHPRQNSLAKSSSGSQDMG 340
           KG+   D   ISDR H+ F  H R ++L ++  G Q +G
Sbjct: 102 KGLKCRDRIFISDRAHLVFDYHQRADALNEAELGKQSIG 140


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 513 HRILCFQSKNSITCINCSHKGVSIFDTDNIS 421
           HRI     KN +TC++C  + V++    +IS
Sbjct: 262 HRIFSGSLKNVVTCLDCKKERVAVDPLMDIS 292


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 407  MCHLSLILSVSKMLTPL*EQFMQVMLFLL 493
            +CHL L L +  +L P  +++  +MLF L
Sbjct: 1781 LCHLLLFLMLPVLLIPFIDRWHSMMLFWL 1809


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 PHFVPTTSTDISPPIFLAAVS 144
           P F+P     ++PP+  AAVS
Sbjct: 132 PVFIPQVGMSVAPPVATAAVS 152


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 513 HRILCFQSKNSITCINCSHKGVSIFDTDNISDR*HIKFGSHPRQNS 376
           H + C+ S+      +CSH  +S+  +  I D  +I++    R +S
Sbjct: 35  HGVFCYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHS 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,832
Number of Sequences: 5004
Number of extensions: 37087
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)