Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E24
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 111 4e-25
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 37 0.012
03_02_0233 - 6622345-6622538,6623526-6624120 29 1.8
02_05_0160 - 26382377-26382874 29 3.1
11_01_0162 - 1330878-1331012,1331379-1331448,1331599-1331762,133... 28 5.4
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 27 7.1
07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575 27 9.4
01_05_0421 + 21990034-21990392,21991691-21992681 27 9.4
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 111 bits (266), Expect = 4e-25
Identities = 65/155 (41%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Frame = +1
Query: 70 LRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGE---ISVLVVGTKCG--PAADKIAKA 234
L R STLV+AEH + P++ +AL AA+ IG + +S+L+ G+ G AA+ A +
Sbjct: 27 LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86
Query: 235 NG-VAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPATAFGKAILPRVAAKLDV 411
+ V++VLVA+SD F AE L+ + Q + ++H++A +T+FGK +LPR AA LDV
Sbjct: 87 HPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSFGKNLLPRAAALLDV 146
Query: 412 SPITDIIGVKDANTFVRTIYAGNAILTLE--AKDP 510
SP+TD+ + + FVR IYAGNA+ T+ +DP
Sbjct: 147 SPVTDVTSISEPRVFVRPIYAGNALCTVRYTGEDP 181
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 100 AEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPA 213
+ +NN +L PA NA+ A+K+ G+IS++V G G A
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGA 206
>03_02_0233 - 6622345-6622538,6623526-6624120
Length = 262
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 322 QKQFNFTHILAPATAFGKAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGN 480
+K ++F A A A G + LPR A +SP + ++ V A +FV + +G+
Sbjct: 67 EKDWSFLDAAAAAAAAGGS-LPRALAAGALSPASRVLAVTPAPSFVDALLSGH 118
>02_05_0160 - 26382377-26382874
Length = 165
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 203 HFVPTTSTDISPPIFLAAVSAFWVAGDNTSLLCSAKTNVLCKRRSC 66
H ++ST I+PP AAVS + DN CSA T++ + C
Sbjct: 40 HGAWSSSTMITPPPRGAAVSKLGILSDN-GAFCSAPTHLSSQSHRC 84
>11_01_0162 -
1330878-1331012,1331379-1331448,1331599-1331762,
1332879-1332919,1333068-1333160,1333250-1333337,
1333615-1333668,1333759-1333874,1334059-1334136,
1334280-1334430,1334500-1334610
Length = 366
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 503 FASRVRIALPA*IVLTKVLASLTPIISVIGDTSSLAATLGKI 378
F S V +LP +T+++AS P+ ++G SL+ TLG +
Sbjct: 167 FESTVGASLPVIASVTRIIASGDPVSRIVG---SLSGTLGYV 205
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 100 AEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPA 213
+ +NN +L A +A+ A++ G+I+V+V G G A
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGA 179
>07_03_1006 + 23260903-23261354,23264532-23264889,23264949-23265575
Length = 478
Score = 27.1 bits (57), Expect = 9.4
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Frame = +1
Query: 199 KCGPAADKIAKANGVAKVLVAESDAFKGFT---AESITPLILATQKQFNFTHILAPATAF 369
KCG A +A AKV VA D K + A IL+T F + T+
Sbjct: 65 KCGLDASDTDRATFRAKVPVASYDDLKPYVKRIANGDRSPILSTHPIIEF--FTSSGTSA 122
Query: 370 G-KAILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVK 516
G + ++P V ++ + + N +V ++ G + L A+ K
Sbjct: 123 GERKLMPIVTDEMARREVLSSLATSVLNVYVPGLHTGKGLYFLFARSETK 172
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 133 WLVTIP--HYYVLLRPTCFVNAAA 68
W T+P H++ LL+P C NAAA
Sbjct: 227 WPTTMPYDHHHPLLQPLCNANAAA 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,497
Number of Sequences: 37544
Number of extensions: 246874
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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