Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E24
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   6e-10
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 30   1.0  
SB_36447| Best HMM Match : Trp_repressor (HMM E-Value=2.5)             29   1.8  
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             29   3.1  
SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)                      28   5.4  
SB_25880| Best HMM Match : Colipase_C (HMM E-Value=5.1)                28   5.4  
SB_51793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)                   27   7.2  

>SB_13745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 25/43 (58%), Positives = 37/43 (86%)
 Frame = +1

Query: 403 LDVSPITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVR 531
           LDV+P++DI+ +   +TFVRTIYAGNA+ T+++ DP+KV+TVR
Sbjct: 2   LDVAPLSDIMEILSEDTFVRTIYAGNAVTTIKSTDPIKVMTVR 44


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 34  SPSSRHLFLTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEI 177
           +P+S H FL A L  +++ L+L     + + P TQ A+     +  E+
Sbjct: 509 TPNSNHWFLLAVLPHMKAVLLLDSRAVDYVKPPTQKAMNKMASVLSEL 556


>SB_36447| Best HMM Match : Trp_repressor (HMM E-Value=2.5)
          Length = 228

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
 Frame = +1

Query: 55  FLTAQLRRLQSTLVLAE--HNN---EVLSPATQNALTAAKKIGGEISVLVVGTKCGPAAD 219
           FL    RRL  ++V+A   H N   E+L P +Q  +   K   GE+  L V      A D
Sbjct: 134 FLEFLDRRLDKSIVIAYKIHVNTVKEILPPFSQKYIDRMKAAQGEVKYLEVAKYYSSAMD 193

Query: 220 KIAKANGVAKV--LVAESDAFKGFTAESIT 303
             A + GV  +  L+  +DA  G++ +  T
Sbjct: 194 -TAVSIGVPLISTLMPAADALTGYSKKKTT 222


>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 336 FYPYLGSRYCFWQGYF 383
           F+PY    +C+W GYF
Sbjct: 298 FFPYADCPHCYWTGYF 313


>SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)
          Length = 697

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 222 LVCSWTTFCTDYKHRYLTANFLS 154
           L   WT+FC+D +H ++T+ + +
Sbjct: 99  LFALWTSFCSDLQHLFITSYYFN 121


>SB_25880| Best HMM Match : Colipase_C (HMM E-Value=5.1)
          Length = 172

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -3

Query: 158 LAAVSAFWVAGDNTSLLCSAKTNVLCKRRSCAVKNRCLLLGENIFQCFF 12
           +   +AFW  G      C+   + +     C +K RC L     F C+F
Sbjct: 85  MTETAAFWYPGKE----CNTADDCIWPNTCCILKKRCSLKLPKYFTCYF 129


>SB_51793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 513 HRILCFQSKNSITCINCSHK-GVSIFDTD 430
           HR+ CFQ K    C + +H   +S FD D
Sbjct: 37  HRVFCFQKKKYAPCEDRTHDIQISTFDYD 65


>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 382 LPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAIL 489
           +P+V A+L    +  ++    AN FV  +Y   AI+
Sbjct: 291 IPKVVARLGAQKLNGVLHPGTANVFVGVLYGATAIV 326


>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 229

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 522 DHFHRILCFQSKNSITCINCSHKGVSIFDTDNISD 418
           D F+RI+CF +K +    N  ++  +IFD D+ S+
Sbjct: 46  DSFNRIVCFDAKFNFD-DNAKYRQKAIFDLDDKSE 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,899
Number of Sequences: 59808
Number of extensions: 292197
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)