Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E24
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical p...   169   1e-42
Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical pr...   169   1e-42
AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    29   2.7  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   6.3  
AF078792-4|AAN84813.1|  261|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  169 bits (410), Expect = 1e-42
 Identities = 80/158 (50%), Positives = 113/158 (71%)
 Frame = +1

Query: 58  LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 237
           L +   RL STLV+AEH+   L+P T NA+TAA K+G E+SVLV G      A+++AK N
Sbjct: 13  LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72

Query: 238 GVAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPATAFGKAILPRVAAKLDVSP 417
           GV +VLVA+ +  K    E + P+ILA+QKQFNFT I A ++AFG+ ++PRVAAKLDVS 
Sbjct: 73  GVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSS 132

Query: 418 ITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVR 531
           I+D+  V  A++F RT+YAGNA+  +++  P+K++T R
Sbjct: 133 ISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFR 170


>Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score =  169 bits (410), Expect = 1e-42
 Identities = 80/158 (50%), Positives = 113/158 (71%)
 Frame = +1

Query: 58  LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 237
           L +   RL STLV+AEH+   L+P T NA+TAA K+G E+SVLV G      A+++AK N
Sbjct: 13  LISNASRLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVN 72

Query: 238 GVAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPATAFGKAILPRVAAKLDVSP 417
           GV +VLVA+ +  K    E + P+ILA+QKQFNFT I A ++AFG+ ++PRVAAKLDVS 
Sbjct: 73  GVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSS 132

Query: 418 ITDIIGVKDANTFVRTIYAGNAILTLEAKDPVKVITVR 531
           I+D+  V  A++F RT+YAGNA+  +++  P+K++T R
Sbjct: 133 ISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFR 170


>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 450 VSIFDTDNISDR*HIKFGSHPRQNSLAKSSSGSQ 349
           V ++D  +  D+ H+K GSHP+Q  +   ++ +Q
Sbjct: 582 VQVWDLTSALDQFHLKNGSHPQQQQVNPPAAANQ 615


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 336 FYPYLGSRYCFWQGYF 383
           F+PY   R+ +W GYF
Sbjct: 347 FFPYASGRHSYWTGYF 362


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 83  CKRRSCAVKNRCLLLGENIFQCFFFP 6
           C R  C     C+  G+N+F CF  P
Sbjct: 286 CDREPCLNGGHCVDDGQNLFTCFCLP 311


>AF078792-4|AAN84813.1|  261|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1b protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 399 GSHPRQNSLAKSSSGSQDMGKIKLLLCSQY*RCYALSC 286
           G      S+ K SS S+++     +LC +Y RCY  SC
Sbjct: 228 GKEGEIESIKKWSSDSENLS----ILCQKYKRCYESSC 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,421,576
Number of Sequences: 27780
Number of extensions: 220118
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)