Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E24
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su...   115   2e-26
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    31   0.64 
At1g74770.1 68414.m08663 expressed protein                             29   1.5  
At1g54820.1 68414.m06249 protein kinase family protein contains ...    29   2.0  
At3g52250.1 68416.m05742 myb family transcription factor contain...    28   4.5  
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    27   6.0  

>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
           subunit family protein contains Pfam profile: PF00766
           electron transfer flavoprotein, alpha subunit
          Length = 363

 Score =  115 bits (277), Expect = 2e-26
 Identities = 67/159 (42%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
 Frame = +1

Query: 34  SPSSRHLFLTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIG--GEISVLVVGTKCG 207
           +P S  + +T+ L R  STL+LAEH +  + P T + + AA  +G    IS+L+ G+   
Sbjct: 20  APRSISISITS-LSRCISTLILAEHESGTIKPQTVSTVVAANSLGESSSISLLLAGSGSS 78

Query: 208 --PAADKIAKAN-GVAKVLVAESDAFKGFTAESITPLILATQKQFNFTHILAPATAFGKA 378
              AA + A  +  V++VLVA+SD F+   AE    L+   ++Q +++HILA +++FGK 
Sbjct: 79  LQEAASQAASCHPSVSEVLVADSDKFEYSLAEPWAKLVDFVRQQGDYSHILASSSSFGKN 138

Query: 379 ILPRVAAKLDVSPITDIIGVKDANTFVRTIYAGNAILTL 495
           ILPRVAA LDVSPITD++ +  ++ F+R IYAGNA+ T+
Sbjct: 139 ILPRVAALLDVSPITDVVKILGSDQFIRPIYAGNALCTV 177


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 27/90 (30%), Positives = 44/90 (48%)
 Frame = +1

Query: 58  LTAQLRRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGTKCGPAADKIAKAN 237
           L+ QLR L++ L  +EH    LS     +L AA++    +S     TK    +D++ +  
Sbjct: 659 LSTQLRGLEAQLESSEHRVLELS----ESLKAAEEESRTMS-----TKISETSDELERTQ 709

Query: 238 GVAKVLVAESDAFKGFTAESITPLILATQK 327
            + + L A+S   K   AE  + L L T+K
Sbjct: 710 IMVQELTADSSKLKEQLAEKESKLFLLTEK 739


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 223 IAKANGVAKVLVAESDAFKGF---TAESITPLILATQKQFNFTHIL 351
           +A+ N +A VLV+ S+AFK F     E +T    +T KQFN    L
Sbjct: 334 MARLNFLADVLVSYSNAFKKFFHPVLEEMTARRSSTAKQFNIDDCL 379


>At1g54820.1 68414.m06249 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 458

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 73  RRLQSTLVLAEHNNEVLSPATQNALTAAKKIGGEISVLVVGT 198
           R  + T +L + NN         A T + K+ GEIS  V+GT
Sbjct: 280 RNFKCTNILLDQNNRAKVSDFGLAKTGSDKLNGEISTRVIGT 321


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 428  ISVIGDTSSLAATLGKIALPKAVAGAKIWVK 336
            + ++GD S +AA  GK+A  + ++  KI ++
Sbjct: 970  LDILGDVSIIAANAGKVASTRPISSKKITLR 1000


>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein
           similar to lysosomal alpha-mannosidase SP:O09159 from
           [Mus musculus]
          Length = 1047

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 336 FYPYLGSRYCFWQGYF 383
           F+PY    Y +W GYF
Sbjct: 355 FFPYADRAYAYWTGYF 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,701,866
Number of Sequences: 28952
Number of extensions: 196143
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)