Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E23
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   233   1e-62
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   233   1e-62
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   5e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.17 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   3.7  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   4.9  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   6.5  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   6.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   8.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  233 bits (570), Expect = 1e-62
 Identities = 106/143 (74%), Positives = 125/143 (87%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRF 383
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGR+G A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 384 KVVKVANVSLLALYKEQKERPRS 452
           KVVKVA V L AL+ E+KE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  233 bits (570), Expect = 1e-62
 Identities = 106/143 (74%), Positives = 125/143 (87%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRF 383
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGR+G A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 384 KVVKVANVSLLALYKEQKERPRS 452
           KVVKVA V L AL+ E+KE+PR+
Sbjct: 121 KVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +3

Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 329
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 330 AGFGREGHAVGDIPGVRFKVVK 395
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 430  SLYRARSDTFATLTTLNLTPGMSPTAWPS 344
            S Y+ + DT+AT  TLN      PT WP+
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWPN 1178


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -3

Query: 430 SLYRARSDTFATLTTLNLTPGMSPTAWPSRPNPATNTSSFSSM 302
           ++Y + + +F   T ++++ G S T   + P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTS-TDIVTLPPPASSTSSFSTI 202


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 364 SPTAWPSRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGCLASTP 188
           S  +W S  + ATNTSS SS   +      N+  F  F +S    +   +   C+  TP
Sbjct: 160 SSISWNSSTSAATNTSSSSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRL-CVVGTP 217


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -2

Query: 200 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 21
           GF  +++ +     R   E +RLP     G  + +V    L T +  L++    P + H 
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409

Query: 20  D 18
           D
Sbjct: 410 D 410


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 388 TLNLTPGMSPTAWPSRPNPATNTSSFSSMWLRQPS 284
           TL L P   PT + S   P  NTS  +S+ L Q S
Sbjct: 104 TLPLKPTNQPTRFASVLMPLVNTSQGASLLLTQRS 138


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 297 NHIEENDEVLVAGFGREGHAVGDIPGVRFKVVKVANVS 410
           N +E N+E+++    +E  A    P V FKV+KV N++
Sbjct: 584 NSLETNEELIIT---KEKFA---FPSVFFKVIKVKNIT 615


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 279 PRDGCLNHIEENDEVLVAGFGREGHAVG 362
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -3

Query: 487 AAGHSLITM*TYDLGLSFCSLYRAR----SDTFATL-TTLNLTPGMSPTAWPSRPNPATN 323
           A G +L+   T   GL+   +  +     + TF  + +++   P + P   PS P+ AT 
Sbjct: 355 ANGSTLLRADTKQYGLALPKITNSNLISPNQTFNPVKSSVKALPTLEP---PSSPSHATA 411

Query: 322 TSSFSSMWLRQPSR 281
           TSS  +++   PSR
Sbjct: 412 TSSLHTLFHTAPSR 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,924
Number of Sequences: 5004
Number of extensions: 46137
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)