Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E23
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 242 1e-64
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 241 3e-64
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 151 4e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 50 1e-06
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.40
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.2
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 2.8
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 28 5.0
04_04_1489 - 33938426-33939363,33939429-33939813 27 6.5
06_03_1377 - 29692895-29692899,29700435-29702190 27 8.7
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 27 8.7
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 27 8.7
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 242 bits (592), Expect = 1e-64
Identities = 110/149 (73%), Positives = 127/149 (85%)
Frame = +3
Query: 6 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 185
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 186 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGD 365
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGR+GHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 366 IPGVRFKVVKVANVSLLALYKEQKERPRS 452
IPGVRFKVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 284 IPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 237 bits (580), Expect = 4e-63
Identities = 107/141 (75%), Positives = 122/141 (86%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRF 383
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGR+GHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 384 KVVKVANVSLLALYKEQKERP 446
KVVKV+ VSLLAL+KE+KE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 241 bits (589), Expect = 3e-64
Identities = 109/143 (76%), Positives = 124/143 (86%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRF 383
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGR+GHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 384 KVVKVANVSLLALYKEQKERPRS 452
KVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 151 bits (365), Expect = 4e-37
Identities = 72/111 (64%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +3
Query: 6 RVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE 182
RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVLE
Sbjct: 65 RVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLE 123
Query: 183 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 335
K+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 124 KIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +3
Query: 315 DEVLVAGFGREGHAVGDIPGVRFKVVK 395
DEVL++GFG +GHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 397 TLTTLNLTPGMSPTAWPSRPNPATNTSSFSSMWLRQPSRGTNAV 266
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 240 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 142
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 17 YR-NG*TSGYSHGAQARESSSRAAMGRQGIQKSP 115
YR +G +GY HG + + SSR + R G+ +P
Sbjct: 187 YRVHGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 391 TTLNLTPGMSPTAWPSRPNPATNTSS 314
TT TP M+P P+ P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>04_04_1489 - 33938426-33939363,33939429-33939813
Length = 440
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 243 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRFKVVKVANVSLLAL 422
+ K KVT+ + + + + + LV+ F E HA + V+FK +K + SL L
Sbjct: 286 MAKGSSKVTSLSDNESDDDCDDVSYDELVSMF-EELHAYSEKEIVKFKALKKDHASLEVL 344
Query: 423 YKEQK 437
Y+E K
Sbjct: 345 YEELK 349
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 243 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRFKVVKVANVSLLAL 422
+ K KVT+ + + + + + LV+ F E HA + V+FK +K + SL L
Sbjct: 374 MAKGSSKVTSLSDSESDDDCDDVSYDELVSMF-EELHAYSEKEIVKFKALKKDHASLEVL 432
Query: 423 YKEQK 437
Y+E K
Sbjct: 433 YEELK 437
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 243 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRFKVVKVANVSLLAL 422
+ K KVT+ + + + + + LV+ F E HA + V+FK +K + SL L
Sbjct: 372 MAKGSSKVTSLSDSESDDDCDDVSYDELVSMF-EELHAYSEKEIVKFKALKKDHASLEVL 430
Query: 423 YKEQK 437
Y+E K
Sbjct: 431 YEELK 435
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 294 LNHIEENDEVLVAGFGREGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 452
L H+++ND V V+G H V D G + K+ +V+ L +Q +RP++
Sbjct: 117 LKHLKQNDLVYVSGLLNSYHKV-DPSGEKHTFYKI-HVTDLNYVLDQNQRPQN 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,541,778
Number of Sequences: 37544
Number of extensions: 371147
Number of successful extensions: 1072
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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