Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E23
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              217   4e-57
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              173   5e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         36   0.025
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   30   0.95 
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)           29   2.9  
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                28   3.8  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)                       27   6.7  
SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)           27   6.7  
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)               27   8.9  
SB_26951| Best HMM Match : CUB (HMM E-Value=0)                         27   8.9  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  217 bits (530), Expect = 4e-57
 Identities = 97/116 (83%), Positives = 108/116 (93%)
 Frame = +3

Query: 30  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQP 209
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 210 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGV 377
           NSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR GHAVGDIPG+
Sbjct: 62  NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  173 bits (422), Expect = 5e-44
 Identities = 80/91 (87%), Positives = 88/91 (96%)
 Frame = +3

Query: 180 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAV 359
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR GHAV
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112

Query: 360 GDIPGVRFKVVKVANVSLLALYKEQKERPRS 452
           GDIPGVRFKVVKVANVSLLAL+KE+KERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +3

Query: 165 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 281
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 154 APPKGFAFHLVPMW-AFLN-SLSAHR 83
           APPKG+ F +VP+W +F N S+  HR
Sbjct: 911 APPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 376 TPGMSPTAWPSRPNPATNTSSFSSMWLRQPSRGTN--AVTFLPFLMSCT 236
           TP   P   P RP P    S  S    + P +GT+  AV  LP++  CT
Sbjct: 269 TPSSGPMLKPERPTPVPRKSIPSEQKQKAP-KGTDVGAVESLPYIALCT 316


>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 8   GSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKS 112
           G++  N  T   + G QARE++ R AM RQG++ +
Sbjct: 267 GNKLVNTRTGERAMGRQARENTFRRAMSRQGLENT 301



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 50  GAQARESSSRAAMGRQGIQKS 112
           G QARE++ R AM RQG++ +
Sbjct: 2   GRQARENTFRRAMSRQGLENT 22


>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
          Length = 293

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 361 PTAWPSRPNPATNTSSFSSMWLRQPSRGTNA-VTFL 257
           P  W + PN  T   S    WL QP++GT+A VT+L
Sbjct: 138 PCTWLAPPNKGT---SAPVTWLAQPNKGTSAPVTWL 170



 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 364 SPTAWPSRPNPATNTSSFSSMWLRQPSRGTNAV 266
           +P  W ++PN  T   S    WL  P++GT+A+
Sbjct: 151 APVTWLAQPNKGT---SAPVTWLAPPNKGTSAI 180


>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -3

Query: 382 NLTPGMSPTAWPSRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGC 203
           N TP +        P   T+TSS  +     P++GT  +   P   + T T L   +  C
Sbjct: 476 NPTPSVESDDMDYIPTKDTSTSSTGNQCSSVPTKGTKPMRPPPGFHALTTTQLTKTDDAC 535

Query: 202 LASTPT 185
             ++P+
Sbjct: 536 EPNSPS 541


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 424 YRARSDTFATLTTLNLTPGMSPTAWPSRPNPATNTSSF 311
           Y  R +++ +    N  P   P  +PS+PN   N S F
Sbjct: 409 YMQRQNSYPSPANQNGPPNSGPYQYPSQPNAPPNASPF 446


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 107 KSPHGYEMEGEPLRWCISC*GHRPRKS 187
           +S HG  MEG P+ W +S  G  P+ S
Sbjct: 84  RSQHGTRMEGVPVCWYVSVWGLSPQVS 110


>SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)
          Length = 154

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 148 PKGFAFHLVPMWAFLNSLS 92
           PKG+ F +VP+W+ L + S
Sbjct: 10  PKGYRFQIVPLWSSLTNRS 28


>SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)
          Length = 270

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 148 PKGFAFHLVPMWAFLNSLS 92
           PKG+ F +VP+W+ L + S
Sbjct: 10  PKGYRFQIVPLWSSLTNRS 28


>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 391 TTLNLTPGMSPTAWPSRPN--PATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRM 218
           TT+  T   S +  P+ P+  P+T T   S+     P++GT  VT     M  + +HL+ 
Sbjct: 372 TTVTTTTATSSSMLPNTPSSSPSTGTQPSSTPIHEPPTQGTTLVT-----METSTSHLKS 426

Query: 217 AEFGCLASTPTFSRTM 170
           +      S PT  +T+
Sbjct: 427 SHH----SRPTTRKTL 438


>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
          Length = 292

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 148 PKGFAFHLVPMW-AFLN-SLSAHR 83
           PKG+ F +VP+W +F N S+  HR
Sbjct: 251 PKGYRFQIVPLWTSFSNRSVFGHR 274


>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
          Length = 794

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 334 PATNTSSFSSMWLRQPSRG-TNAVTFLPFLMSC--TRTHLRMAEFGC 203
           P T TSS SSM+++  S G   A  F+    S   TRT + +A F C
Sbjct: 711 PGTVTSSESSMYIKFHSNGNVTAAGFMATYTSAWSTRTIVLIAVFSC 757


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 325  NTSSFSSMWLRQPSRGTNAVTFLPFLM-SCTRTHLRMAEFGCLASTPTFSRTMPLA 161
            NT  FS +     S G    T   F++ +CTR        GC +STP  +RT+  A
Sbjct: 1391 NTRLFSGLDKAITSSGRKPYTLYSFILKACTRA-------GCSSSTPASARTLEAA 1439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,146,507
Number of Sequences: 59808
Number of extensions: 408874
Number of successful extensions: 1709
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1707
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)