Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E23
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 236 7e-63
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 227 3e-60
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 34 0.063
At3g17900.1 68416.m02280 expressed protein 28 4.2
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 4.2
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 4.2
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 4.2
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 27 5.5
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 27 5.5
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 5.5
At5g49660.1 68418.m06147 leucine-rich repeat transmembrane prote... 27 7.3
At3g18040.2 68416.m02295 mitogen-activated protein kinase, putat... 27 7.3
At3g18040.1 68416.m02294 mitogen-activated protein kinase, putat... 27 7.3
At1g74430.1 68414.m08623 myb family transcription factor (MYB95)... 27 7.3
At5g49110.1 68418.m06079 expressed protein ; expression support... 27 9.6
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 27 9.6
At4g10550.1 68417.m01727 subtilase family protein contains simil... 27 9.6
At3g28790.1 68416.m03593 expressed protein 27 9.6
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 236 bits (577), Expect = 7e-63
Identities = 108/143 (75%), Positives = 124/143 (86%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK R QRWADK++KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRF 383
QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGR+GHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 384 KVVKVANVSLLALYKEQKERPRS 452
KVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 227 bits (555), Expect = 3e-60
Identities = 106/143 (74%), Positives = 121/143 (84%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK R QRWADK +KK++ G WK PF +SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVRF 383
QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGR+GHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 384 KVVKVANVSLLALYKEQKERPRS 452
KVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
protein
Length = 125
Score = 33.9 bits (74), Expect = 0.063
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +3
Query: 201 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGREGHAVGDIPGVR 380
K+PNSA RK +V+L N + A +P +G ++ +E+ VL+ G GR V D PGV+
Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94
Query: 381 FKVVK 395
++
Sbjct: 95 SHCIR 99
>At3g17900.1 68416.m02280 expressed protein
Length = 838
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 233 NTLTNG*IRLLGFNANFFEDDALSMRCTTEGVRLPSR 123
N +G LL F E D S+RC EG+ +P R
Sbjct: 441 NGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGR 477
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 277 TNAVTFLPFLMSCTRTHLRMAEFGCLASTPTFSRTMPLA*DAPPKGFA 134
+N T FL+ + TH+ + EFG +T T+ +P A +PP A
Sbjct: 2161 SNHPTMPLFLVGSSNTHIYLWEFGNERATATYG-VLPAANVSPPYALA 2207
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 87 WADKEFKKAHMGTRWKANPFGGASHAKG 170
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 87 WADKEFKKAHMGTRWKANPFGGASHAKG 170
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 349 PSRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSC 239
PS PA SSF S+ L+Q +R T + PF++ C
Sbjct: 33 PSAAFPA-KPSSFKSLKLKQSARLTRRLDHRPFVVRC 68
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 340 PNPATNTSSFSSMWLRQP-SRGTNAVTFLPFLMSCTR 233
P PA++T SFSS P S ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 397 TLTTLNLTPGMSPTAWPS 344
T TT+N +PG P +WP+
Sbjct: 587 TKTTINTSPGKLPVSWPT 604
>At5g49660.1 68418.m06147 leucine-rich repeat transmembrane protein
kinase, putative contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 966
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 481 GHSLITM*TYDLGLSFCSLYRARSDTFATLTTLNLTPGMS 362
G +L T YD+G ++C+ R D +T L+L+ G+S
Sbjct: 44 GDALSTWNVYDVGTNYCNFTGVRCDGQGLVTDLDLS-GLS 82
>At3g18040.2 68416.m02295 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK9) identical to ATMPK9 [Arabidopsis
thaliana] gi|7106544|dbj|BAA92223; mitogen-activated
protein kinase (MAPK), PMID:12119167; similar to blast
and wounding induced mitogen-activated protein kinase
(BWMK1) GB:AAD52659 [Oryza sativa]; contains Pfam
profile: PF00069 Eukaryotic protein kinase domain
Length = 422
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 2 HEGSRYRNG*T-SGYSHGAQARESSSRAA--MGRQGIQKSPHG 121
HEGS YRNG + +GYS + + +S A+ +G + KS +G
Sbjct: 361 HEGSDYRNGTSQTGYSARSLLKSASISASKCIGMKPRNKSEYG 403
>At3g18040.1 68416.m02294 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK9) identical to ATMPK9 [Arabidopsis
thaliana] gi|7106544|dbj|BAA92223; mitogen-activated
protein kinase (MAPK), PMID:12119167; similar to blast
and wounding induced mitogen-activated protein kinase
(BWMK1) GB:AAD52659 [Oryza sativa]; contains Pfam
profile: PF00069 Eukaryotic protein kinase domain
Length = 510
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 2 HEGSRYRNG*T-SGYSHGAQARESSSRAA--MGRQGIQKSPHG 121
HEGS YRNG + +GYS + + +S A+ +G + KS +G
Sbjct: 449 HEGSDYRNGTSQTGYSARSLLKSASISASKCIGMKPRNKSEYG 491
>At1g74430.1 68414.m08623 myb family transcription factor (MYB95)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 271
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 406 TFATLTTLNLTPGMSPTAWPSRPNPATNTSSFSS 305
T TT +LT ++ ++ S P P+ +SSFSS
Sbjct: 125 THEPTTTTSLTVDVTSSSTTSSPTPSPTSSSFSS 158
>At5g49110.1 68418.m06079 expressed protein ; expression supported by
MPSS
Length = 1487
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = -2
Query: 440 LLLFFVQS*KRHVCY-----LNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRH 276
LLLF +Q + V + +N +K +++ + + + F E C +LI L V + + RH
Sbjct: 1308 LLLFQIQEQQESVSHNSKGIINKIKQENKCIPDLI-FQIEDCERYLIQLSKVTKLNLLRH 1366
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -3
Query: 439 SFCSLYRARSDTFATLTTLNLTPGMSPTAWPSRPNPATNTSSFSSMWLRQPSRGTNAVTF 260
S SLYR +++ AT+ +L G+ + P P NT S L + T A++
Sbjct: 361 SIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKS--LNEFLDRTYALSC 418
Query: 259 LPFLMSCTRTHLRMAEFG 206
+ + C + + + E G
Sbjct: 419 IASMSGCCQVTIPLGEHG 436
>At4g10550.1 68417.m01727 subtilase family protein contains
similarity to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana]
Length = 778
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 87 WADKEFKKAHMGTRWKANPFGGASHAKG 170
W+ + A + T WK +PFG A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 376 TPGMSPTAWPSRPNPATNTSSFSSMWLRQPSRGT 275
+P SPT PS P P+T T S + PS T
Sbjct: 274 SPSGSPTPTPSTPTPSTPTPSTPTPSTPTPSTPT 307
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,761
Number of Sequences: 28952
Number of extensions: 263795
Number of successful extensions: 722
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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