Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E22
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...   165   3e-42
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    47   1e-06
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    46   3e-06
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    37   0.001
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    36   0.002
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    28   0.65 
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    26   3.5  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   3.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   6.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.0  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    25   8.0  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   8.0  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score =  165 bits (401), Expect = 3e-42
 Identities = 70/143 (48%), Positives = 90/143 (62%)
 Frame = +2

Query: 50  NDYEVLLRMDCVGICGSDVHYWQTGACGHFVLKEPMIMGHEXXXXXXXXXXXXXXXXXXD 229
           +D++V + +   GICGSDVHYW+ G  G F+LK+PMI+GHE                  D
Sbjct: 28  DDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGD 87

Query: 230 RVAIEPGVPCRYCEFCKTGRYHLCPDMSFCATPPVHGNLVRYYKHAADFCFKLPDHVSME 409
            VA+EPG  CR C++C++GRY+LCP M F ATPP  G L  YY    DFC KLP  +S+E
Sbjct: 88  PVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVE 147

Query: 410 EGALLEPLSVGIHACRRGGVSAG 478
           EGAL EP+SV +HA  RG +  G
Sbjct: 148 EGALFEPMSVAVHAMTRGNLKCG 170


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
 Frame = +2

Query: 11  KDLQLVQTPIPEINDYEVLLRMDCVGICGSDVHYWQTGACGHFVL--KEPMIMGHEXXXX 184
           ++++  + P+ E    EVL+ +   G+C +D+H  Q    G + L  K P+I GHE    
Sbjct: 19  ENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQ----GDWPLPAKMPLIGGHEGAGV 74

Query: 185 XXXXXXXXXXXXXXDRVAIE-PGVPCRYCEFCKTGRYHLCPDMSFCATPPVHGNLVRYYK 361
                         DRV ++     C  CE+C      +CP +       V G    Y  
Sbjct: 75  VVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQLSGY-TVDGTFQHYCI 133

Query: 362 HAADFCFKLPDHVSMEEGA 418
             A     +P+ V +E  A
Sbjct: 134 ANATHATIIPESVPLEVAA 152


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 24/182 (13%)
 Frame = +2

Query: 14  DLQLVQTPIPEI-NDYEVLLRMDCVGIC-GSDVHYWQTGACGHFVLKEPMIMGHEXXXXX 187
           ++++ + P P I +  +V+++     IC GSD H +     G   +++  I+GHE     
Sbjct: 47  NVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPG---IEKGAILGHESCGIV 103

Query: 188 XXXXXXXXXXXXXDRVAIEPGVPCRYCEFCKTGRYHLCPDMSFCATPPV-----HGNLVR 352
                        DRV I   + C  C FCK   Y  C   +      V     H  +  
Sbjct: 104 AEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDVNYGSHHSAIFG 163

Query: 353 YYKHAADF----------------CFKLPDHVSMEEGALL-EPLSVGIHACRRGGVSAGH 481
           Y K   D                 C KLPD +   EG  + + L   +HAC  G V  G 
Sbjct: 164 YTKLLGDVPGCQAEYIRVPFAEINCCKLPDDIPDSEGLFMSDVLCTSLHACTLGEVKKGD 223

Query: 482 VV 487
            V
Sbjct: 224 TV 225


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = +2

Query: 56  YEVLLRMDCVGICGSDVHYWQTGACGHFVLKEPMIMGHEXXXXXXXXXXXXXXXXXXDRV 235
           +EV +++D   +C +D  Y  +G         P+++GHE                  D V
Sbjct: 35  HEVRVKVDWSAVCHTDA-YTLSGVDPEGAF--PIVLGHEGAGIVESIGEGVINVRPGDHV 91

Query: 236 AIEPGVPCRYCEFCKTGRYHLC 301
            +     C+ C+FC++G+ +LC
Sbjct: 92  ILLYTPECKECKFCRSGKTNLC 113


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 22/82 (26%), Positives = 37/82 (45%)
 Frame = +2

Query: 56  YEVLLRMDCVGICGSDVHYWQTGACGHFVLKEPMIMGHEXXXXXXXXXXXXXXXXXXDRV 235
           +EV +++   G+C +D  Y  +G     +   P+I+GHE                  D V
Sbjct: 38  HEVRIKIVNSGVCHTDA-YTLSGKDPEGLF--PVILGHEGAGIVESVGPQVTTVQVGDPV 94

Query: 236 AIEPGVPCRYCEFCKTGRYHLC 301
                  C+ C+FCK+G+ +LC
Sbjct: 95  IALYTPECKTCKFCKSGKTNLC 116


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 137  SDHTLQSASSVRRSHIYQRNPFAVALHNHLSQGSVFVLAVNP 12
            +D T+++ S + RSH +Q   F V  H H  +  V  + + P
Sbjct: 1037 TDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGP 1078


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 163 HDHRFFEHEVTTRSSLPVVY 104
           HD RFF H  T R++L  +Y
Sbjct: 127 HDRRFFSHLSTLRAALIALY 146


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 30  KHRSLR*MIMKCYCEWIALVYVAPTYTTGRLERVVTSCSKNL 155
           +H S R +  +   +W +L   AP   TG   RV+   + NL
Sbjct: 493 EHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNL 534


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 222 SVTASLSSQASHAGTANSVKPDXXXXXXXXXXXXLRPFTATSLDITSTLPTSVSSYLTT 398
           S ++S SS +S + +++S                    +++S   +S+ P+S SS++TT
Sbjct: 185 SSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT 243


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 222 SVTASLSSQASHAGTANSVKPDXXXXXXXXXXXXLRPFTATSLDITSTLPTSVSSYLTT 398
           S T+S SS  +    +N+                  PF + S  I +++P+SVSS+ ++
Sbjct: 311 SFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSS 369


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -2

Query: 465 PPRRHACIPTESGSKSAPSSIDTWSGNLKQKSAAC 361
           PPR H  +  + G+ ++ S ++    + ++ +AAC
Sbjct: 128 PPRFHVDVKVKKGTHASESQVNKQLNDKERVAAAC 162


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 140  RSDHTLQSASSVRRSHIYQRNPFAVALH 57
            R DHTL     V  +H  + N +A ALH
Sbjct: 1215 REDHTLPIPIKVISAHASKCNVYAKALH 1242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,100
Number of Sequences: 5004
Number of extensions: 33917
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)