Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E22
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 199 1e-51
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.38
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 30 0.88
SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_50105| Best HMM Match : fn3 (HMM E-Value=1.5e-28) 27 6.2
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 199 bits (485), Expect = 1e-51
Identities = 87/155 (56%), Positives = 104/155 (67%)
Frame = +2
Query: 14 DLQLVQTPIPEINDYEVLLRMDCVGICGSDVHYWQTGACGHFVLKEPMIMGHEXXXXXXX 193
+L V I ++ +V + M VGICGSDVHYW+ G G FVL PM++GHE
Sbjct: 6 NLAAVLHGIDDLRLVQVQISMHTVGICGSDVHYWKHGCIGDFVLTAPMVLGHESSGVICA 65
Query: 194 XXXXXXXXXXXDRVAIEPGVPCRYCEFCKTGRYHLCPDMSFCATPPVHGNLVRYYKHAAD 373
DRVAIEPG PCR C +CK GRY+LC M+FCATPP HG+L R Y H AD
Sbjct: 66 VGEGVSDLKEGDRVAIEPGTPCRTCSYCKKGRYNLCAKMNFCATPPYHGSLCRRYNHQAD 125
Query: 374 FCFKLPDHVSMEEGALLEPLSVGIHACRRGGVSAG 478
FC+KLPDHVS+EEGALLEPLSVG+HAC R G++ G
Sbjct: 126 FCYKLPDHVSLEEGALLEPLSVGVHACNRAGITIG 160
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 61.7 bits (143), Expect = 3e-10
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Frame = +2
Query: 17 LQLVQTPIPEI-NDYEVLLRMDCVGICGSDVHYWQTGACGHFVLKEPMIMGHEXXXXXXX 193
L ++ P+P + N EV++++ GIC D+ + G + +++GHE
Sbjct: 60 LSVITRPVPHVSNPSEVIVKVAYSGICDRDLQILE----GELPAAKCVVLGHEFSGVVSD 115
Query: 194 XXXXXXXXXXXDRVAIEPGVPCRYCEFCKTGRYHLCPDMSFCATPPV--HGNLVRYYKHA 367
DRV + P C C+ C+ G+ H C + V +G +Y +
Sbjct: 116 VGSDVKNVSIGDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNGGWTQYARVH 175
Query: 368 ADFCFKLPDHVSMEEGALLEPLSVGIH 448
A +P VS+++ AL EP+S +H
Sbjct: 176 APNIHIVPPQVSLKQAALCEPISCVLH 202
>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 51.6 bits (118), Expect = 3e-07
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Frame = +2
Query: 17 LQLVQTPIPEIND-YEVLLRMDCVGICGSDVHYWQTGACGHFVLKEPMIMGHEXXXXXXX 193
L ++ P P + +V++++ + G+D+H + G + +I+GH+
Sbjct: 12 LSVITRPTPHVQSPRDVVVKIAYSAVSGTDLHVLE----GRIDCAKSIILGHQFVGIVKE 67
Query: 194 XXXXXXXXXXXDRVAIEPGVPCRYCEFCKTGRYHLC--PDMSFCATPPVHGNLVRYYKHA 367
DRV I P C C+FC G+ HLC + +G ++ + +
Sbjct: 68 IGADVQHVSVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNGGWAQFCRLS 127
Query: 368 ADFCFKLPDHVSMEEGALLEPLS 436
A LP V+ E+ EP+S
Sbjct: 128 AKNVIPLPHQVTFEQALFSEPMS 150
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 239 IEPGVPCRYCEFCKTGRYHLCPDMSFCATPPVH 337
+ PG C TG H+C D+ FCA P H
Sbjct: 1773 VGPGRASCTCRVGFTGNGHICNDIDFCAPNPCH 1805
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 30.3 bits (65), Expect = 0.88
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 280 NRTLPPLPGHELLRDSARSRQPR 348
N+TLPPLP H L QPR
Sbjct: 1287 NKTLPPLPKHSALEPDVEIHQPR 1309
>SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -3
Query: 116 ASSVRRSHIYQRNPFAVALHNHLSQGSVFVLAVNPLP 6
++S RRS IY R PF +AL L GSV +NP P
Sbjct: 56 SASTRRSVIYSRPPFCLALSLLLISGSV---ELNPGP 89
>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 116 ASSVRRSHIYQRNPFAVALHNHLSQGSVFVLAVNPLP 6
++S RRS IY R PF +AL GSV +NP P
Sbjct: 56 SASTRRSAIYSRPPFCLALSLLFISGSV---ELNPGP 89
>SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 113 SSVRRSHIYQRNPFAVALHNHLSQGSVFVLAVNPLP 6
+S RRS IY R PF +AL GSV +NP P
Sbjct: 55 ASTRRSAIYSRPPFCLALSLLFISGSV---ELNPGP 87
>SB_50105| Best HMM Match : fn3 (HMM E-Value=1.5e-28)
Length = 721
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 248 GVPCR-YCEFCKTGRYHLCPDMSFCATPPVH 337
G+P YC+ K+GRY +CP ++ P H
Sbjct: 180 GIPEEFYCDAWKSGRYPICPCIAKPNPPAFH 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,172
Number of Sequences: 59808
Number of extensions: 296248
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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