Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E22
         (487 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   5.6  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   7.3  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   7.3  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    22   9.7  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    22   9.7  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 203 CHLA*Q-QLLTPRDP*S*VL*ARSDHTLQSASSVRRSHIYQRNPFAVALHN 54
           C +A Q QL +P DP    L  ++ H L++A    +   + R     ALH+
Sbjct: 308 CRIAEQRQLASPTDPDISALDRQARHALKTAIRASKKQFFDR--MLQALHD 356


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 74  MDCVGICGSDVHYWQTG 124
           + C G+CGS  H   TG
Sbjct: 50  VSCAGVCGSKHHTHCTG 66


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 260 RYCEFCKTGRYHLCPDMSFCATP 328
           R+C  C+ G ++L  +  F  TP
Sbjct: 474 RHCRECRLGYFNLDAENKFGCTP 496


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 251 VPCRYCEFCKTGRYHLCPDM--SFCATPPVHGNLVRYY 358
           +P  YC++C T   H  P +  + C T   H + V++Y
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHC-TGRKHKDNVKFY 37


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 280 NRTLPPLPGHELLRDSAR 333
           NR  PP P + +LRD  R
Sbjct: 280 NRAFPPRPQNTVLRDINR 297


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,768
Number of Sequences: 2352
Number of extensions: 9347
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)