Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E21
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0016 - 7380933-7382027                                           28   2.2  
05_07_0214 - 28451861-28453069                                         27   3.8  
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    27   5.0  
05_06_0071 + 25355853-25356095,25356183-25356239,25356848-253570...    26   6.6  
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    26   8.7  
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    26   8.7  
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880...    26   8.7  

>11_02_0016 - 7380933-7382027
          Length = 364

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 280 IHLELVFVCFDTGTDVSGGGGE--MTPRAVVFVFYH 179
           +   L + C  TG +  GGGGE   T    V VF+H
Sbjct: 61  LRARLFYPCRPTGGEAGGGGGEAGATKPLPVVVFFH 96


>05_07_0214 - 28451861-28453069
          Length = 402

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 262 FVCFDTGTDVSGGGGEM 212
           FV  D G+DV GGGGE+
Sbjct: 194 FVEDDAGSDVEGGGGEL 210


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 140 WPIRNADLEDDEDARSRNQKGTVAATFLNFNR 45
           W IRNA +E+ +  +  N KG V    ++  +
Sbjct: 337 WAIRNAQVEEADRTKKNNGKGGVKIEIIDITK 368


>05_06_0071 +
           25355853-25356095,25356183-25356239,25356848-25357069,
           25357143-25357227,25357993-25358083,25358172-25358336,
           25358583-25358699,25358773-25358848,25359940-25360102,
           25360184-25361064
          Length = 699

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 229 GGGGEMTPRAVVFVFYHRADRCIQQIFRSDGQSEMLI*KTTRTLDLVIKKER*QRHF 59
           GGGGE+ P     V  H A R +    R+D  ++    +    L LV + E  QR+F
Sbjct: 54  GGGGEVPPAGAAAVPPHVACRVVGVELRADAATD----EVYARLALVAEGEMLQRNF 106


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 41  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 160
           F D  LK  LL  +++   ERP  + ++   +A+T  D+L
Sbjct: 149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 188


>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 41  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 160
           F D  LK  LL  +++   ERP  + ++   +A+T  D+L
Sbjct: 126 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 165


>02_05_0096 +
           25785995-25786311,25786716-25786776,25787825-25788059,
           25788292-25788530,25789700-25789951,25790043-25790223,
           25790864-25790952,25791269-25791342,25791481-25791584,
           25791919-25791957,25792324-25792436
          Length = 567

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 41  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 160
           F D  LK  LL  +++   ERP  + ++   +A+T  D+L
Sbjct: 136 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,226,395
Number of Sequences: 37544
Number of extensions: 145117
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)