Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E21
(337 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 33 0.076
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 0.39
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 29 1.2
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 29 1.2
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 29 1.2
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 29 1.2
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 28 1.6
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05) 27 2.9
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 27 3.8
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 27 5.0
SB_1833| Best HMM Match : efhand (HMM E-Value=1.1) 27 5.0
SB_24097| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34) 26 6.6
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 6.6
SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033) 26 6.6
SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 32.7 bits (71), Expect = 0.076
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 257 DKDKFQV-NLDVQHFTPEEISVKTADG 334
D DKFQ+ LDV+ F PEEI+ K +G
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENG 28
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 257 DKDKFQVNLDVQHFTPEEISVK 322
D KF + LDV F PEE+ VK
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVK 117
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.5 bits (58), Expect(2) = 0.39
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = -2
Query: 324 VFTDISSGV--KCCTSKFTWN 268
+ TD ++ V KCCTS +TWN
Sbjct: 1818 ISTDGTTAVPNKCCTSNYTWN 1838
Score = 21.4 bits (43), Expect(2) = 0.39
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -2
Query: 294 CCTSKFTWNL 265
CCT ++ WN+
Sbjct: 1860 CCTHEYGWNI 1869
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 254 ADKDKFQV-NLDVQHFTPEEISVKTADGY 337
A+++K ++ LDV+ + PEEIS K +G+
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGF 30
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 263 DKFQV-NLDVQHFTPEEISVKTADGY 337
D+ ++ LDV+ + PEEIS K +G+
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGF 264
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 254 ADKDKFQV-NLDVQHFTPEEISVKTADGY 337
A+++K ++ LDV+ + PEEIS K +G+
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGF 30
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 242 SCIKADKDKFQVNLDVQHFTPEEISVK 322
S D KF + LDV F PEE+ VK
Sbjct: 19 SAATKDDTKFTLALDVSDFKPEEVDVK 45
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 254 ADKDKFQV-NLDVQHFTPEEISVKTADGY 337
A+++K ++ LDV+ + PEEIS K +G+
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGF 30
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 254 ADKDKFQV-NLDVQHFTPEEISVKTADGY 337
A+++K ++ LDV+ + PEEIS K +G+
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGF 30
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 251 KADKDKFQVNLDVQHFTPEEISVK 322
KA +DKF + +DV F PE I V+
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQ 115
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 254 ADKDKFQV-NLDVQHFTPEEISVKTADG 334
A K+ ++ LDV+ + PEEIS K +G
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENG 29
>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
Length = 974
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 140 ITPEDLLNASIGPMVKNEYYRPWRHLAATARDVGSCIKADKDKFQVNLDVQ 292
+ P DL + V ++ P H A + GSC +D++ Q L+VQ
Sbjct: 702 LPPRDLFFPVLPVRVNDKLMFPLCHRCAQEEEQGSCTHSDEEVHQDLLEVQ 752
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 263 DKFQV-NLDVQHFTPEEISVKTADG 334
DK ++ LDV+++ PEEIS+K G
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHG 62
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 215 LAATARDVGSCIKADKDKFQVNLDVQHFTPE 307
+ A+ G K D +F V LDV F+P+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 146 PEDLLNASIGPMVKNEYYRPWRHLAATARDVGSCIKADKDKFQVNLDVQHFTPEEISVK 322
PE + +++ + N + A G+ ++ DKF + +DV+ F PE I V+
Sbjct: 58 PEGVEASNVKTRISNHGQLHIEAMKALPEPDGAKKESKDDKFSMAMDVKGFPPEAIKVQ 116
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 257 DKDKFQV-NLDVQHFTPEEISVKTADG 334
+++K ++ LDV+ + PEEIS K +G
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENG 30
>SB_1833| Best HMM Match : efhand (HMM E-Value=1.1)
Length = 125
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 110 RLLDQHFGLAITPED--LLNASIGPMVKNE---YYRPWRHLAATARD 235
R LDQ FG+ +TPE LL A G K + YR + H+ + D
Sbjct: 58 RCLDQLFGIVLTPEQDALLMAKYGSDAKQKGMVNYRMFCHVIGSVFD 104
>SB_24097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 161 NASIGPMV--KNEYYRPWRHLAATARDVGSCIKADK 262
NAS P+V N +YR +RH T V + ADK
Sbjct: 59 NASYFPVVYRSNRHYRHYRHYRHTVITVSTVFIADK 94
>SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)
Length = 792
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 74 PFLFDYEIERPRRLLDQHFGLAITPEDLLNASIGPMVKN 190
P + + ++E PR L D H + PE + + ++ N
Sbjct: 514 PCVLEVDLEYPRHLHDLHNDYPLAPESIKIGKVDKLIPN 552
>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1133
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 74 PFLFDYEIERPRRLLDQHFGLAITPEDLLNASIGPMVKN 190
P + + ++E PR L D H + PE + + ++ N
Sbjct: 936 PCVLEVDLEYPRHLHDLHNDYPLAPESIKIGKVDKLIPN 974
>SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)
Length = 708
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 140 ITPEDLLNASIGPMVKNEYYRPWRHLAATARDVGSCIKADKDK 268
+ P DL + + V ++ P HL A + GSC +D+++
Sbjct: 640 LPPRDLFFSVLPVRVNDKLMFPLCHLCAQEGEQGSCTHSDEER 682
>SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 140 ITPEDLLNASIGPMVKNEYYRPWRHLAATARDVGSCIKADKDK 268
++P DL + + V ++ P H A + GSC +D+++
Sbjct: 106 LSPRDLFSPVLPVRVNDKLMFPLCHWCAQEEEQGSCTHSDEER 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,018,179
Number of Sequences: 59808
Number of extensions: 153106
Number of successful extensions: 378
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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