Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E21
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    26   7.2  
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    26   7.2  
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (...    25   9.5  

>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 41  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 160
           F D  LK  LL  +++   ERP  + ++   +A+T  D+L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 41  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 160
           F D  LK  LL  +++   ERP  + ++   +A+T  D+L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172


>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
           (LON) identical to Lon protease homolog 1  mitochondrial
           precursor SP:O64948 from [Arabidopsis thaliana]
          Length = 888

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +2

Query: 110 RLLDQHFGLAIT----PEDLLNASIGPMVKNEYYRPW-RHLAATARDVGSCIKADKDKFQ 274
           R+LDQH GL+      PE ++   I    +    R   R+LAA AR     +   +    
Sbjct: 562 RVLDQH-GLSSEFLKIPEAMVKNIIQRYTREAGVRSLERNLAALARAAAVMVAEHEQSLP 620

Query: 275 VNLDVQHFTPEEISVKTADG 334
           ++ DVQ  T   ++ + A+G
Sbjct: 621 LSKDVQKLTSPLLNGRMAEG 640


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,348,836
Number of Sequences: 28952
Number of extensions: 106237
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)