Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E20
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 9e-24
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 105 3e-23
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 92 3e-19
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 1e-11
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1) 66 2e-11
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16) 32 0.32
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0) 29 2.2
SB_1127| Best HMM Match : Acetyltransf_1 (HMM E-Value=9.4e-19) 29 2.9
SB_37094| Best HMM Match : PH (HMM E-Value=0.0005) 28 5.1
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 28 5.1
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36) 27 6.8
SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3) 27 6.8
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1) 27 9.0
>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 106 bits (255), Expect = 9e-24
Identities = 58/121 (47%), Positives = 79/121 (65%)
Frame = +2
Query: 107 QLNDGYKIPVLALGTGRGTASESDTLDQVRQAVFWAIEAGYRHIDTAAVYGDEEQVGQGI 286
+LN+G ++PVL LGT + QV AV +AI+ GYRHID A Y +E++VG +
Sbjct: 5 KLNNGLEMPVLGLGTWKSKPG------QVENAVKFAIKEGYRHIDCAYAYRNEKEVGDAL 58
Query: 287 AEAIAKGLVTREDLFITTKLWNDKHARGQVVPTLRESLQRLGLDYVDLYLIHFPISSKAD 466
E + +V R+DLFIT+KLWN KH V +SL+ LGLDY+DLYLIH+P+S + D
Sbjct: 59 RELLGS-VVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPLSFR-D 116
Query: 467 G 469
G
Sbjct: 117 G 117
>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 407
Score = 105 bits (251), Expect = 3e-23
Identities = 45/92 (48%), Positives = 66/92 (71%)
Frame = +2
Query: 185 DQVRQAVFWAIEAGYRHIDTAAVYGDEEQVGQGIAEAIAKGLVTREDLFITTKLWNDKHA 364
++V AV AIE GYRHID A +YG+E ++G+ ++E + +G V RE+LF+T+KLW D H
Sbjct: 65 EEVGNAVRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKLWCDSHH 124
Query: 365 RGQVVPTLRESLQRLGLDYVDLYLIHFPISSK 460
V+P + +L+ L LDY+DLYLIH P++ K
Sbjct: 125 PDDVLPACQATLKNLQLDYLDLYLIHIPVAFK 156
Score = 35.1 bits (77), Expect = 0.034
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 188 QVRQAVFWAIEAGYRHIDTAAVYGDEEQVGQGIAEAIAKGLVTRED 325
+V AV A E GYR ID A ++G+E G+ ++ + KG V RE+
Sbjct: 13 KVGNAVRLAAELGYRLIDCAEIHGNE---GEALSGVLTKGKVKREE 55
>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 333
Score = 91.9 bits (218), Expect = 3e-19
Identities = 52/121 (42%), Positives = 75/121 (61%)
Frame = +2
Query: 110 LNDGYKIPVLALGTGRGTASESDTLDQVRQAVFWAIEAGYRHIDTAAVYGDEEQVGQGIA 289
+NDG KIP+L LG A + + +QAV WA+E+GYR IDTA+ Y +E+ VG
Sbjct: 70 MNDGRKIPLLGLG-----AHDIHS----KQAVLWALESGYRLIDTASRYHNEQSVG---- 116
Query: 290 EAIAKGLVTREDLFITTKLWNDKHARGQVVPTLRESLQRLGLDYVDLYLIHFPISSKADG 469
EA+ + R ++++ TK++ +H + + +SL RLGL YVDLYLIHFP+ S G
Sbjct: 117 EAVRCSNIPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFPVPSGVVG 176
Query: 470 S 472
S
Sbjct: 177 S 177
>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/80 (38%), Positives = 52/80 (65%)
Frame = +2
Query: 209 WAIEAGYRHIDTAAVYGDEEQVGQGIAEAIAKGLVTREDLFITTKLWNDKHARGQVVPTL 388
+A++ GYR +DTA +Y +E++VG A+ K + RED+++TTKL + +
Sbjct: 52 FALKNGYRMLDTADIYQNEKEVGS----AVRKSGLKREDIYVTTKLKPSEEGHSNALKYA 107
Query: 389 RESLQRLGLDYVDLYLIHFP 448
+ES+++L + YVDL+LIH P
Sbjct: 108 KESIKKLDIGYVDLFLIHTP 127
>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
Length = 93
Score = 65.7 bits (153), Expect = 2e-11
Identities = 39/100 (39%), Positives = 56/100 (56%)
Frame = +2
Query: 110 LNDGYKIPVLALGTGRGTASESDTLDQVRQAVFWAIEAGYRHIDTAAVYGDEEQVGQGIA 289
L+DGYKIP G G E T +QAV WA+E GYR IDTAA Y +E++VG
Sbjct: 3 LSDGYKIP--RFGLGLYDLDEKHT----KQAVLWALENGYRMIDTAASYNNEKRVG---- 52
Query: 290 EAIAKGLVTREDLFITTKLWNDKHARGQVVPTLRESLQRL 409
EA+ + V R ++++ TK+++ H + + SL L
Sbjct: 53 EALRESAVPRSEVYLVTKVYHTDHGYEKTMKAYDRSLSAL 92
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 65.3 bits (152), Expect = 3e-11
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Frame = +2
Query: 110 LNDGYKIPVLALGTGRGTASESDTLDQVRQAVFWAIEAGYRHIDTAAVYGDEEQVGQGIA 289
L GY +PV+ GT T E DTL V+ A +E GYR IDTA Y E +A
Sbjct: 331 LASGYTMPVMGFGTA--TLGE-DTLSVVKTA----LETGYRLIDTAQGYPLSEPQ---VA 380
Query: 290 EAIAKGLVTREDLFITTKLWNDKHARGQVVPTLRESLQRLGLDYVDLYLIHFP-----IS 454
+AIA + R+D+FI TKL + ++ SL+ L DY+DL+LIH +
Sbjct: 381 KAIADSGIPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIHSKTCDDFLL 440
Query: 455 SKADGSPDNIDYLETWEGM 511
+ A+G P + E+W+ M
Sbjct: 441 TCAEGEPRG-TWKESWKAM 458
>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
Length = 195
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +2
Query: 323 DLFITTKLWNDKHARGQVVPTLRESLQRLGLDYVDLYLIHF----PISSKADGSPDNID 487
+L +K+ + + +++ + +SL+RLG+D +DLYL+H+ P+ D + +D
Sbjct: 27 ELGTLSKVRPENASEMKMMLSCEKSLERLGIDRIDLYLLHWEGRVPLEETVDAFRELVD 85
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 326 LFITTKLWNDKHARGQVVPTLRESLQRLGLDYVDLYLIHFPISSK 460
L T+ + H R + TLRE L++L +Y DL H IS +
Sbjct: 875 LLNVTRQEEELHQREDELRTLREKLEKLETEYTDLEKKHSQISEE 919
>SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)
Length = 754
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 137 LALGTGRGTASESDTLDQVRQAVFWAIEAGYRHIDTAAVYGDEEQVGQGIAEAI---AKG 307
+ALG RG ASE DQ +++G+ D VY + G A +I +KG
Sbjct: 614 IALGGARGAASEEAMFDQRLYNRSKGMDSGFGDDDAYNVYDKAWRQGASTASSIYRPSKG 673
Query: 308 LVTRE 322
+V ++
Sbjct: 674 IVDKD 678
>SB_1127| Best HMM Match : Acetyltransf_1 (HMM E-Value=9.4e-19)
Length = 317
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 209 WAIEAGYRHIDTAAVYGDEEQVGQGIAEAIAKGLVTR 319
W G+RH +VY +Q GQG+ + + L+ R
Sbjct: 219 WRAIEGFRHTVEHSVYVRSDQRGQGLGPRLMQALIER 255
>SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)
Length = 1007
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 170 ESDTLDQVRQAVFWAIEAGYRHIDTAAVYGDEEQV 274
E D DQV + VF EAGY I + E+ V
Sbjct: 132 EDDIYDQVEEPVFQEKEAGYESIGPSLSVSSEKSV 166
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 120 DIKYQYWHWVPAEELPLNLTRW 185
D+ YQY +PA+ELP++ R+
Sbjct: 155 DLAYQYRRDIPADELPVSFARF 176
>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
Length = 1346
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 205 HSLPYLIQRVRFRGSSSAGTQCQYWYFI 122
+++P IQR+R S G + WYF+
Sbjct: 127 NTMPLKIQRIRVTAQSVEGFTIELWYFL 154
>SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3)
Length = 586
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/85 (20%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 206 FWAIEAGYRHIDTAAVYGDE-EQVGQGIAEAIAKGLVTREDLFITTKLWNDKHARGQVVP 382
FW +EAG + I A Y ++ E + + I +A+ ++ +++ + + ++V
Sbjct: 453 FWELEAGEKLIVKTAFYVEQTEGINKYIMQAVTAAYYEFYEIVDSSESYRLSGQQPELVV 512
Query: 383 TLRESLQRLGLDYVDLYLIHFPISS 457
E + ++ D +++F +SS
Sbjct: 513 CSSERITINNFEWTDEQILNFRVSS 537
>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1744
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 290 QRYPDRLVPHHHKLQPYLC 234
QRYP R+ HKL Y+C
Sbjct: 1724 QRYPQRVRSRPHKLDDYVC 1742
>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
Length = 670
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 205 HSLPYLIQRVRFRGSSSAGTQCQYWYFI 122
+++P IQR+R S G + WYF+
Sbjct: 127 NTMPLKIQRIRVTAQSVEGFVIELWYFL 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,659
Number of Sequences: 59808
Number of extensions: 324772
Number of successful extensions: 794
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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