Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E20
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    27   0.085
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 0.085
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 384 VGTTCPRACLSFHNLVVINRSSRVTNPL 301
           VG   PR CL  HN+ + N+   ++ PL
Sbjct: 597 VGKKMPRYCLFGHNVTLANKFESLSEPL 624


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
          variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 58 VARNTNTQSILPYVRL 11
          + R  NT+ +LPYV +
Sbjct: 34 IPREMNTERLLPYVEI 49


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein
          protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 58 VARNTNTQSILPYVRL 11
          + R  NT+ +LPYV +
Sbjct: 34 IPREMNTERLLPYVEI 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,232
Number of Sequences: 438
Number of extensions: 2815
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)