Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E19
         (552 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 223 EASLAESGKDMLTVEPRESGGSKQSDFTSRAPLR 324
           EA + +SGK +  V     G S ++  T  APL+
Sbjct: 296 EAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLK 329


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 149 FMHSAERPVVRSYHPRDY 202
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 149 FMHSAERPVVRSYHPRDY 202
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 158 SAERPVVRSYHPRDY 202
           SA  P+VRSY P  Y
Sbjct: 281 SAATPLVRSYAPERY 295


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 163 RAAGGAKLPSAGLC 204
           ++  G ++PSAGLC
Sbjct: 99  KSCQGCEMPSAGLC 112


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 472 RQERKSSTDYSEPRHRTEVSPDRI 401
           R+E+K+  +  +P   T  SPD I
Sbjct: 268 RKEKKAQKEKDKPNSTTNGSPDVI 291


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 163 RAAGGAKLPSAGLC 204
           ++  G ++PSAGLC
Sbjct: 47  KSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 163 RAAGGAKLPSAGLC 204
           ++  G ++PSAGLC
Sbjct: 230 KSCQGCEMPSAGLC 243


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 232 LAESGKDMLTVEPRESGGSKQSDFTS 309
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
          transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 11 PRGGGALNYDPRAAE 55
          P+GGGA+  DP + +
Sbjct: 37 PQGGGAVQPDPGSCD 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,431
Number of Sequences: 336
Number of extensions: 2641
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)