Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E19
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.36 
SB_50003| Best HMM Match : PAN (HMM E-Value=0.044)                     29   1.9  
SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)                  28   4.4  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   4.4  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              28   4.4  
SB_130| Best HMM Match : rve (HMM E-Value=0.0043)                      28   4.4  
SB_56337| Best HMM Match : RVT_1 (HMM E-Value=1.7e-23)                 28   5.8  
SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)                  28   5.8  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               27   7.7  
SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)                 27   7.7  
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)                 27   7.7  
SB_50979| Best HMM Match : RBM1CTR (HMM E-Value=3.3)                   27   7.7  
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)                     27   7.7  
SB_17781| Best HMM Match : RVT_1 (HMM E-Value=1.3e-24)                 27   7.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -3

Query: 529 VGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRS 350
           +GL   R +  AA   T   ++R  +TD        +VSP  +   A  +K+RP   P +
Sbjct: 300 IGLYTRRREQAAAFTRTPAVKQR--ATDPLATEGTDDVSPPTLRVYAQQIKDRPLAVPAA 357

Query: 349 EWASTSRLTGV 317
            ++ T +++ V
Sbjct: 358 SYSRTMQISAV 368


>SB_50003| Best HMM Match : PAN (HMM E-Value=0.044)
          Length = 286

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 514 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTEV--SPDRIGAV-AHALKN 374
           N +   AA+PST P+Q+ +S+  +      + V  SP R+G V  ++L+N
Sbjct: 80  NYTSAAAAVPSTPPKQDPRSTVAFGRTTKSSPVQKSPSRVGHVRRYSLEN 129


>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 487 PSTTPRQERKSSTDYSE-PRHRTEVSPDRIGAVAHALKNRPRR 362
           P+T PR +R+S T  S+  RH + ++PD + A  H  + +  R
Sbjct: 8   PNTIPRSDRRSRTGISQRHRHTSSLTPDTM-AGTHLREQQSNR 49


>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
          Length = 599

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 538 SPGVGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRS 359
           S G      ++    ++ STT        +D S   H+T  +P+R G+V   L +RP  +
Sbjct: 416 SAGSDADTRKNLRARSMVSTTSDDSEGERSDTSFSSHQT--TPEREGSVTRRLAHRPTSA 473

Query: 358 P 356
           P
Sbjct: 474 P 474


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 111 CSVREEPQFRTFGSCTRPSG 170
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 519 VSTDRSTTLLYRAQHPARNGSRLQTIPSPD 430
           + T  ST   +R  HP +  S +QT+PS D
Sbjct: 168 IQTLPSTDSAHRTDHPTQTESTVQTLPSTD 197


>SB_130| Best HMM Match : rve (HMM E-Value=0.0043)
          Length = 297

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 181 KLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQSDFTSRAPLR*GATSKPIRISE 360
           +L    LCL  +K E  L E       +E   S  +  +D+ SRAPL+   TS+P  + E
Sbjct: 133 RLQVHSLCLQITKCEFVLREVEYKRCKIEYISSKENACADYLSRAPLQ--DTSEPADLPE 190


>SB_56337| Best HMM Match : RVT_1 (HMM E-Value=1.7e-23)
          Length = 846

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 508 SQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDR--IGAVAHALKNRPRRSPRSEWAST 335
           ++HD+A+            T Y +P  RTEVS D   +G  A   +  P+   R      
Sbjct: 578 AEHDSAVSQLKDALVSSPVTAYFDPERRTEVSVDASPVGLAAILSQVEPKTEARHVITYA 637

Query: 334 SR-LTGVER 311
           SR LT  E+
Sbjct: 638 SRSLTETEQ 646


>SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)
          Length = 1115

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = -3

Query: 478 TPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEWAST 335
           TP+ ER  +  +S P        DR+GA        P    RS W  T
Sbjct: 165 TPKTERGETPGHSTPGWAETPRTDRMGAETPGATPTPGSKRRSRWDET 212


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -3

Query: 541 ESPGVGLSLNRSQ-HDAALPSTTPRQERKSSTDYS-EPRHRTEVSPDRIGAVAHALKNRP 368
           +SPG   +  R + H       +PRQ   S       PR R+  SP R+        N P
Sbjct: 254 QSPGQTYATKRGRSHSPRRVPVSPRQRSNSPRRVPVSPRQRSN-SPRRVPVSPRQRSNSP 312

Query: 367 RRSPRS 350
           RR P S
Sbjct: 313 RRVPVS 318


>SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +1

Query: 196 GLCLNASKAEASLAESGKDMLTVEPRESGGSKQSDFTSRAPLR*GATSKPIRISEIGAVG 375
           GL L  +   +S A+  + +L+ +P  S      D T+R     G+   P+R+S +    
Sbjct: 9   GLAL-CTVVPSSNAKPKRKILSSKPHVSHAESSQDSTAR---NLGSNPAPVRLSNLVTTS 64

Query: 376 SLTRAPRLR 402
              +APRL+
Sbjct: 65  PRKQAPRLK 73


>SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)
          Length = 1242

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 508 SQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDR--IGAVAHALKNRPRRSPRSEWAST 335
           ++HD+A+            T Y +P  RTEVS D   +G  A   +  P+   R      
Sbjct: 673 AEHDSAVSQLKDALVSAPVTAYFDPERRTEVSVDASPVGLAAILSQVEPKTKARHVITYA 732

Query: 334 SR-LTGVER 311
           SR LT  E+
Sbjct: 733 SRSLTETEQ 741


>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1744

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 508  SQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDR--IGAVAHALKNRPRRSPRSEWAST 335
            ++HD+A+            T Y +P  RTEVS D   +G  A   +  P+   R      
Sbjct: 1171 AEHDSAVSQLKDALVSAPVTAYFDPERRTEVSVDASPVGLAAILSQVEPKTDARHVITYA 1230

Query: 334  SR-LTGVER 311
            SR LT  E+
Sbjct: 1231 SRSLTETEQ 1239


>SB_17670| Best HMM Match : RVT_1 (HMM E-Value=6.1e-25)
          Length = 1271

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 508 SQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDR--IGAVAHALKNRPRRSPRSEWAST 335
           ++HD+A+            T Y +P  RTEVS D   +G  A   +  P+   R      
Sbjct: 667 AEHDSAVSQLKDALVSAPVTAYFDPERRTEVSVDASPVGLAAILSQVEPKTEARHVITYA 726

Query: 334 SR-LTGVER 311
           SR LT  E+
Sbjct: 727 SRSLTETEQ 735


>SB_50979| Best HMM Match : RBM1CTR (HMM E-Value=3.3)
          Length = 167

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 514 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDR 404
           NR + D  L  + P+   +S T+ +EPR    VSP R
Sbjct: 50  NRPRPDLTLDESKPKGAWQSGTESTEPRKSRFVSPLR 86


>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 373 GSLTRAPRLRYGPDSPQFDVGAR 441
           G   R P LRYGP    F +G R
Sbjct: 250 GESFRVPHLRYGPSKDAFHLGTR 272


>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
          Length = 754

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 49  CRIRHEVSFTLLMARRCDSNTAQYERNRSFG 141
           CR+  E+  + +++R  DS   +Y +N+S G
Sbjct: 591 CRLESEMDVSAILSRSDDSPVKRYRQNKSTG 621


>SB_17781| Best HMM Match : RVT_1 (HMM E-Value=1.3e-24)
          Length = 460

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 508 SQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDR--IGAVAHALKNRPRRSPRSEWAST 335
           ++HD+A+            T Y +P  RTEVS D   +G  A   +  P+   R      
Sbjct: 321 AEHDSAVSQLKDALVSAPVTAYFDPERRTEVSVDASPVGLAAILSQVEPKTDARHVITYA 380

Query: 334 SR-LTGVER 311
           SR LT  E+
Sbjct: 381 SRSLTETEQ 389


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 520  SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEWA 341
            S +R + D+  PS  PR+ RKS +  S PR R   SP         +++ P   P+ + A
Sbjct: 904  SPSRRRRDSPTPSPPPRRRRKSPSP-SPPRRRRR-SPSN---SPPPMRSSPLPPPQRKRA 958

Query: 340  ST 335
            ST
Sbjct: 959  ST 960


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,506,566
Number of Sequences: 59808
Number of extensions: 399269
Number of successful extensions: 2931
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2929
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)