Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E19
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07790.1 68418.m00892 expressed protein                             29   1.6  
At5g28380.1 68418.m03446 pentatricopeptide (PPR) repeat-containi...    28   4.8  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    27   6.3  
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb...    27   8.3  
At4g01290.1 68417.m00170 expressed protein                             27   8.3  
At1g04540.1 68414.m00446 C2 domain-containing protein low simila...    27   8.3  

>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = -2

Query: 401 RSRGARVKEPTAPISEIRMGFDVAPHRSGARLVKSLCLEPPDSRGSTVSISLPDSARLAS 222
           RSR +R K    P ++   G D  PH SG    +S   +    +GS+ S+S   SA+  +
Sbjct: 328 RSR-SRNKVKHCPSNKTFKGSDHDPHSSGQASSESQSNQTSMEKGSSSSLSEAKSAKKGT 386

Query: 221 ALEAFRH 201
           +L   RH
Sbjct: 387 SLGNKRH 393


>At5g28380.1 68418.m03446 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 390

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +1

Query: 7   SSTRWRRSKL*SPGCRIRHEVSFTLLMARRCDSNTAQYERNRSFGHLVHALGRAAGGAKL 186
           ++ R++ +    P C+I+HE++ T+L  +    N +     +   H V+  G  A   K 
Sbjct: 12  TNERFKHNNYYCPDCKIQHELAPTILEEQNSVFNASVVHVGQGSSHQVNGKGIQAAEPKS 71

Query: 187 PSAGLCLNASK 219
            S  L    +K
Sbjct: 72  GSLVLIKGPTK 82


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +1

Query: 109 TAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDM 255
           T  Y    S G LVH L      A  PSA    N  +   SLAE+  DM
Sbjct: 13  TITYYHPMSIGLLVHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDM 61


>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
           (RbohC) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein C from Arabidopsis thaliana
           [gi:3242785]
          Length = 905

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = +1

Query: 46  GCRIRHEVSFTLLMARRCDSNTAQYERNRSFGHLVHALGRAAG--GAKLPSAGLCLNASK 219
           G  +      TLL   R +  T   +R  S  H +  L   +G  G + P     L+ +K
Sbjct: 76  GSSVEESPELTLLKRNRLEKKTTVVKRLASVSHELKRLTSVSGGIGGRKPPRPAKLDRTK 135

Query: 220 AEASLAESGKDMLTVEPRESGGS 288
           + AS A  G   ++     +G S
Sbjct: 136 SAASQALKGLKFISKTDGGAGWS 158


>At4g01290.1 68417.m00170 expressed protein 
          Length = 991

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -3

Query: 544  YESPGVGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHAL 380
            Y  P  G  +NR +H A+L +    Q+R        P       P+R G+V H L
Sbjct: 931  YGMPPPGSQVNRGEHPASLQTLLGIQQRMDPAK-QIPAVGQAGGPNRQGSVGHEL 984


>At1g04540.1 68414.m00446 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 601

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 508 SQHDAALPSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKN 374
           S     LP+TT   E+KSS +Y+ P     V   R  ++   L N
Sbjct: 248 SSESETLPTTTDSDEKKSS-EYTPPSKNLRVPRQRYNSIESDLIN 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,554
Number of Sequences: 28952
Number of extensions: 261874
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)